Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0610 ATGCGGACCGGCACAGAGGTACAGACAGTGAAGAAATCTAACGCCGGATCCGATAGGAAAACCGCTGGCCCGGTCGCGAATGCCAGGAAGCTTGACAAGGCGGCAGAGCTGGCGGCGCTGGAGCGCGTGGCGGGGGAGGTGAGGCACGCGATTCAGAAGGCGCGTTTGGAGAAGATGAGCCAGGCCGAGCTGGAGAAGCAGATCAATGAGCGGCCGCAGGTGGTGCAGGAGTATGAGAATGGTGGGGCGGTGCCGAATCAAAAGGTGCTCGCGAAGATGGGGAGGGTGCTCGGGGAGGAAGATGAAGATGTTGAAAGGTGGAGGTTGTGGATGATGGAGGATTCAGGAAGTTAG 354 0.5932 MRTGTEVQTVKKSNAGSDRKTAGPVANARKLDKAAELAALERVAGEVRHAIQKARLEKMSQAELEKQINERPQVVQEYENGGAVPNQKVLAKMGRVLGEEDEDVERWRLWMMEDSGS* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0610 117 CDD HTH_XRE 50 104 IPR001387 -
Lja4g0610 117 Gene3D - 35 102 IPR010982 GO:0003677
Lja4g0610 117 Coils Coil 37 57 - -
Lja4g0610 117 SMART mbf_short4 50 104 IPR001387 -
Lja4g0610 117 Pfam Multiprotein bridging factor 1 1 43 IPR013729 -
Lja4g0610 117 MobiDBLite consensus disorder prediction 1 26 - -
Lja4g0610 117 MobiDBLite consensus disorder prediction 1 16 - -
Lja4g0610 117 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 100 - -
Lja4g0610 117 Pfam Helix-turn-helix 52 99 IPR001387 -
Lja4g0610 117 SUPERFAMILY lambda repressor-like DNA-binding domains 49 100 IPR010982 GO:0003677
Lja4g0610 117 ProSiteProfiles Cro/C1-type HTH domain profile. 51 104 IPR001387 -
Lja4g0610 117 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0610 Lja-Chr4 5046425 5046778 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Lja4g0610 HTH_3 1.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0610 K03627 - twl:119996545 127.102