Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0609 ATGAACAAAAGTGGCAGGAAGCTCTCTTCAAAATGGGATTTGATAGACGAACGCGAATCTGAATTTGCACCCGATGGTGTTGCTAACAGCAATAGTACTAGTTCTAGATGGTCCTACAAGGAAAGAAATGATAGGTTAAACCCCAGAATGGAATTTTTATCCAAGGAACCTTTGTCTGGAGGCACACATTCAAATAAATATGATGGTACGAATAATGAGGAATACAGAGTTTTGGATGCAACAATTGCAAGGGACACCGATGGAAGTTACGGGATGGAAATGTCTCCAGGGTTTGAAGACTGGAAAAATAAGCACAGTCAATCTCCAAAAAATAGTTACAGCAGGTTAGTCAGGAGTAGTCGGAGCAGGAGTCGAAGCCCTCCACATGGTTTTAAGTTGGATTCAGGAGTCAATGGCAGAAACAGAATGCGGCCCGAAGGATTGGCACAACCATGTAGAGATTTTGCTGCTGGGAAATGCATTAGAGGTAGTCAATGTCATTTCCTTCACCATGATAATCAAAATTATGAGAACGGCAGGGAAAGTAGACAAAGGCAAGATAGAGCTCCCGGGTATTCAGCTCCCCATGAGAGTGGGGACATTTCCCTTACAAGTGGAAGATCTGATGAAGCTTGTATTAACTTTGCAAAAGGAAGGTGTAGATTCGGAGCATCATGCAGGCATGTGCATCATGGCAATTCTGATGAATTCGGCAAAGTTTCTGTGGGTGAATCAAGTAGGGAAAATGACATTGATAACAGGCGCTTAGAGAATTCTTTCAAGCAGGGTGGTCGGCATGACCTGAACCGCAGTGCTGATACTCCTTGCAGATTTTTTGCTTTTGGGAATTGTCGTAATGGTAACCATTGTAGGTTTTCTCATGATAGGCAATCAGGTAGGAGCCCTGACAGGAGATTGAGGGATGATAGTTCACGGAGTAATCAAGGTGGAGATCAGGTGTCAAATAGACCAAAATTGAGTGATTCTGCTAGTTCTAATGGAAGGCTAAGAGACGATAGATGGCGTTCAGATGGCAGCATTGCTGATGTGAGTAAAGTTTGGGACGGTCCAAAAAGTAATGATTTGTCTGCTGTCTCTAATTCAAGAAAGCTGGTTGAGGACAACCAAGATGGAATCATGGGCGCCCCAGGCCATGGATTCTCTGCTTGGCCAATGAGTGATGGATGGGACCATAGCTTAGACAAGAACATGGTGCATGATAAAACATCATTTTCAAGTGATAAAAAGGAACCCAACTTGTGGGCCGCAGGAAATGCTACTGCCAATATTCACACTTCTCAGCCAGTAGGAACAGGCATTTGGCCTGGTGATGAACAAATGTCTCCTGATTGGAATGTGGGGACTTCCAGTCACTTTAAAAAAAACCATGAGCAGAACAATCTCCAAGTTGCTCCAGGACATGGATATAATCAGAATGCTCAGAATGTAAATGCTTTGCATTCTTCAAGCTCCCATGCAGTTGGACAGAGTCAACCACCATTTTCCGTTGTTCCTCCAAGAGCAAGAATTGTTGAGGGTATGCAGAATCAGGAGCTCTTTACTGAGAAAAAGTATATTGGTGAGCCAAATATCATGGATGCAAGCCTATTACAAGTTGGTTCTAGAAATCCTTCTACTCAGAACATGGTCAGCAAAGAACAGCTTGTTCAACTTACATGCCTCACAGCCTCTTTGGCACAAATCCTTGGAACAGGCAGTCAGCTCCCACAACTTTGCAGTAATTTAAATTCTCACGATGCAAAGGATACTCCCTCCGGTAAGCCTGTTTCCATAGCATTCAGCAAGCCAGATCCTTCTATTGGATTCCAGAAGCACAATAATCCAAGTGGGTTCAGCCCAATGATTTCTCCTAGTAAAATTATTCCAAAAGAATCAGTAGAAATGCCATCACTGTTATCTAACTCTGAACAATTTGATGATTCTTGTAAGACTGCCTTTTCAGAAGAACAACTTGTCAAGAGTAAACATTTAATTCAGTTGCAGAAAGATGAAAACATTGGGGATAATAAGGAGAGTAATGAAATGGTAGCTGAAGAAAAGCGAAGTTCTCGAGGTGAGAATAAAATTACAAAAGAGAGTGGTCCTTTGGAAAGCATGGACCAAAGTGGTGGGCCTGATGAGATCAAGAAAACAAAGGATGTGAAGGGGATGCGTGCATTTAAAGGTTCATTGGTGGAGTTCATTAAGGAGCTTCTAAAACCAACATGGAAAGAAGGCCAAATCACCAAAGACGATTATAAAGAAATAGTGAAGAAAGTTACTGATAAAGTATCTGTTACAGTGCAGCGGGCACATGTTCCTCAAACACAAGAGAAAATTGACCGCTATTTATCAGTTTCGAAACCAAAGCTTAACAAACTTATACAGGTCAGTGGTGGCTCTCTTACAGATTTCAGTCATATGTCTGCAGGATTCAAAATCTTGTTATCAGTTTAA 2457 0.4196 MNKSGRKLSSKWDLIDERESEFAPDGVANSNSTSSRWSYKERNDRLNPRMEFLSKEPLSGGTHSNKYDGTNNEEYRVLDATIARDTDGSYGMEMSPGFEDWKNKHSQSPKNSYSRLVRSSRSRSRSPPHGFKLDSGVNGRNRMRPEGLAQPCRDFAAGKCIRGSQCHFLHHDNQNYENGRESRQRQDRAPGYSAPHESGDISLTSGRSDEACINFAKGRCRFGASCRHVHHGNSDEFGKVSVGESSRENDIDNRRLENSFKQGGRHDLNRSADTPCRFFAFGNCRNGNHCRFSHDRQSGRSPDRRLRDDSSRSNQGGDQVSNRPKLSDSASSNGRLRDDRWRSDGSIADVSKVWDGPKSNDLSAVSNSRKLVEDNQDGIMGAPGHGFSAWPMSDGWDHSLDKNMVHDKTSFSSDKKEPNLWAAGNATANIHTSQPVGTGIWPGDEQMSPDWNVGTSSHFKKNHEQNNLQVAPGHGYNQNAQNVNALHSSSSHAVGQSQPPFSVVPPRARIVEGMQNQELFTEKKYIGEPNIMDASLLQVGSRNPSTQNMVSKEQLVQLTCLTASLAQILGTGSQLPQLCSNLNSHDAKDTPSGKPVSIAFSKPDPSIGFQKHNNPSGFSPMISPSKIIPKESVEMPSLLSNSEQFDDSCKTAFSEEQLVKSKHLIQLQKDENIGDNKESNEMVAEEKRSSRGENKITKESGPLESMDQSGGPDEIKKTKDVKGMRAFKGSLVEFIKELLKPTWKEGQITKDDYKEIVKKVTDKVSVTVQRAHVPQTQEKIDRYLSVSKPKLNKLIQVSGGSLTDFSHMSAGFKILLSV* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0609 818 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 151 171 IPR000571 GO:0046872
Lja4g0609 818 MobiDBLite consensus disorder prediction 98 145 - -
Lja4g0609 818 Gene3D - 268 342 - -
Lja4g0609 818 MobiDBLite consensus disorder prediction 19 71 - -
Lja4g0609 818 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 796 - -
Lja4g0609 818 MobiDBLite consensus disorder prediction 291 342 - -
Lja4g0609 818 SUPERFAMILY CCCH zinc finger 273 295 IPR036855 GO:0046872
Lja4g0609 818 SMART c3hfinal6 206 232 IPR000571 GO:0046872
Lja4g0609 818 SMART c3hfinal6 146 172 IPR000571 GO:0046872
Lja4g0609 818 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Lja4g0609 818 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Lja4g0609 818 MobiDBLite consensus disorder prediction 313 331 - -
Lja4g0609 818 MobiDBLite consensus disorder prediction 671 716 - -
Lja4g0609 818 MobiDBLite consensus disorder prediction 107 126 - -
Lja4g0609 818 ProSiteProfiles Zinc finger C3H1-type profile. 206 234 IPR000571 GO:0046872
Lja4g0609 818 Gene3D - 147 248 - -
Lja4g0609 818 MobiDBLite consensus disorder prediction 176 203 - -
Lja4g0609 818 ProSiteProfiles Zinc finger C3H1-type profile. 151 173 IPR000571 GO:0046872
Lja4g0609 818 MobiDBLite consensus disorder prediction 291 312 - -
Lja4g0609 818 MobiDBLite consensus disorder prediction 233 255 - -
Lja4g0609 818 Pfam RNA-binding, Nab2-type zinc finger 211 227 - -
Lja4g0609 818 Pfam CCCH-type zinc finger 275 295 IPR041367 -
Lja4g0609 818 MobiDBLite consensus disorder prediction 671 700 - -
Lja4g0609 818 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0609 Lja-Chr4 5038379 5043998 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja4g0609 zf-CCCH_4 1.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0609 - K22909 gmx:100783856 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0609 4 5038379 5043998 Lja4g0609 4 5038379 5043998 ECH
Lja1g4519 1 58905272 58911948 Lja4g0609 4 5038379 5043998 ECH