Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0608 ATGGATACAAACCAAAACAACAACACTACTAGTGCATTCACAAGTTTGAATAGCACTTGGAATCTGGAGAAGATGGATCAAGACCCTATAATTCTCCAACTCCACCAACAAAACCACCAAATCCCTTCAGGGGTTTGGCCCTACCACCACCTTCTTCACATGCCATCTTCATCAAACACCATCACACCCTCCTCATCAGGTTCTCTCAGTGATATCTTAGGAGTCCACAGCATAGAAGAAGGAGAAGAAGAACAAGAAGAAGAAGAGTTAGGAGCAATGAAGGAGATGATGTACAAGATCGCTGCTATGCAGCCGGTGGACATCGACCCCGCCACCATCCGGAGGCCGAAGAGGAGAAACGTCCGCATCAGCGATGATCCGGCAAGTGTGGCGGCGAGGCATCGGAGAGAGAGGATCAGTGAGAAGATACGGATCCTCCAGAGACTCGTCCCTGGAGGAACCAAGATGGACACGGCGTCCATGCTCGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGGCAAATCAGGTTGCTTCAGTCCACCACTCCTCAACACCACCCTCCTCCACAACCACCACAATGTGTTGGAATTGGAAGTACTACAGGTGCTCCTCTTCTACCTCCTAGCACCTTGTTATTAGCCCCTTCTTTTGATTGGCCCTTTGCACCAAATTTATTACTCAGTTCCACTGCCACTACTGTGGTCGCCACCAACATGCCGGCCCGACTAGGAATTGAAGCCGTTGGCCACGGTCATGCTTGTGATGCCTCTTCCAGCTTTAATCATCATGAGGTAATCAGTGAATAA 810 0.4938 MDTNQNNNTTSAFTSLNSTWNLEKMDQDPIILQLHQQNHQIPSGVWPYHHLLHMPSSSNTITPSSSGSLSDILGVHSIEEGEEEQEEEELGAMKEMMYKIAAMQPVDIDPATIRRPKRRNVRISDDPASVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTTPQHHPPPQPPQCVGIGSTTGAPLLPPSTLLLAPSFDWPFAPNLLLSSTATTVVATNMPARLGIEAVGHGHACDASSSFNHHEVISE* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0608 269 Gene3D - 127 187 IPR036638 GO:0046983
Lja4g0608 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 123 172 IPR011598 GO:0046983
Lja4g0608 269 SMART finulus 129 178 IPR011598 GO:0046983
Lja4g0608 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 191 IPR036638 GO:0046983
Lja4g0608 269 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 17 229 IPR045843 GO:0003700|GO:0006355
Lja4g0608 269 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 17 229 - -
Lja4g0608 269 CDD bHLH_AtIND_like 124 181 - -
Lja4g0608 269 Pfam Helix-loop-helix DNA-binding domain 133 172 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0608 Lja-Chr4 5018701 5019510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0608 90 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 87.255 1.30e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g0608 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0608 - - aprc:113856609 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0608 4 5018701 5019510 Lja4g0608 4 5018701 5019510 ECH
Lja4g0608 4 5018701 5019510 Lja1g4518 1 58888308 58889096 PCT