Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja4g0608 | ATGGATACAAACCAAAACAACAACACTACTAGTGCATTCACAAGTTTGAATAGCACTTGGAATCTGGAGAAGATGGATCAAGACCCTATAATTCTCCAACTCCACCAACAAAACCACCAAATCCCTTCAGGGGTTTGGCCCTACCACCACCTTCTTCACATGCCATCTTCATCAAACACCATCACACCCTCCTCATCAGGTTCTCTCAGTGATATCTTAGGAGTCCACAGCATAGAAGAAGGAGAAGAAGAACAAGAAGAAGAAGAGTTAGGAGCAATGAAGGAGATGATGTACAAGATCGCTGCTATGCAGCCGGTGGACATCGACCCCGCCACCATCCGGAGGCCGAAGAGGAGAAACGTCCGCATCAGCGATGATCCGGCAAGTGTGGCGGCGAGGCATCGGAGAGAGAGGATCAGTGAGAAGATACGGATCCTCCAGAGACTCGTCCCTGGAGGAACCAAGATGGACACGGCGTCCATGCTCGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGGCAAATCAGGTTGCTTCAGTCCACCACTCCTCAACACCACCCTCCTCCACAACCACCACAATGTGTTGGAATTGGAAGTACTACAGGTGCTCCTCTTCTACCTCCTAGCACCTTGTTATTAGCCCCTTCTTTTGATTGGCCCTTTGCACCAAATTTATTACTCAGTTCCACTGCCACTACTGTGGTCGCCACCAACATGCCGGCCCGACTAGGAATTGAAGCCGTTGGCCACGGTCATGCTTGTGATGCCTCTTCCAGCTTTAATCATCATGAGGTAATCAGTGAATAA | 810 | 0.4938 | MDTNQNNNTTSAFTSLNSTWNLEKMDQDPIILQLHQQNHQIPSGVWPYHHLLHMPSSSNTITPSSSGSLSDILGVHSIEEGEEEQEEEELGAMKEMMYKIAAMQPVDIDPATIRRPKRRNVRISDDPASVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSTTPQHHPPPQPPQCVGIGSTTGAPLLPPSTLLLAPSFDWPFAPNLLLSSTATTVVATNMPARLGIEAVGHGHACDASSSFNHHEVISE* | 270 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja4g0608 | 269 | Gene3D | - | 127 | 187 | IPR036638 | GO:0046983 | |
Lja4g0608 | 269 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 123 | 172 | IPR011598 | GO:0046983 | |
Lja4g0608 | 269 | SMART | finulus | 129 | 178 | IPR011598 | GO:0046983 | |
Lja4g0608 | 269 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 128 | 191 | IPR036638 | GO:0046983 | |
Lja4g0608 | 269 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 17 | 229 | IPR045843 | GO:0003700|GO:0006355 | |
Lja4g0608 | 269 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 17 | 229 | - | - | |
Lja4g0608 | 269 | CDD | bHLH_AtIND_like | 124 | 181 | - | - | |
Lja4g0608 | 269 | Pfam | Helix-loop-helix DNA-binding domain | 133 | 172 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja4g0608 | Lja-Chr4 | 5018701 | 5019510 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja4g0608 | 90 | 191 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT5G09750 | 87.255 | 1.30e-48 | 159 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Lja4g0608 | HLH | 1.2e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja4g0608 | - | - | aprc:113856609 | 322.398 |