Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja4g0607 | ATGGTAGTGATTGAGCACCACGACACTCATGATCGCAACGCCAACCCCTCCACCACCGCCAACGATGCTTCCGACGGCTTCGAAACCGCCAGCGACACCGATCTCGCCAGCGACGCCGACGATATCAGACTGGAAGACCACAAACATGCCGAACAACCGCAGCAGCACCATCAGGAGGAAGAGGACCAGCAGCAGAAGCAGGTAGAGCAAGAGCAAGAGCAGGAGCAGGGTGATCCTCCAAGCATCATTTCCTCCGACGTTGCCTCGATCAATGACGAAGAATCGAATCAGAAAGCATTGGTTGAAGCGAATGAAGCAAAGACAGAAGGGAACAAGCTTTTTCTGGAAGGGAAGTATGAGGAGGCATTGGTGCAGTATGAACTTGCTTTACAAGTTGCGCCAGACATGCCTTCATCTGTGGAAATCCGATCAATTTTCCATTCAAACAGTGCTGTGTGCTTTCTCAAACTAGGAAAATATGAAAACACAATTAAAGAATGCACAAAGGCATTAGAACTGAATCCTACATATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCCATGAAAAGCTTGAGCATTTTGAAGAGGCCCTTGCTGATCTCAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAGCCATTCGGCGACTTGAGCCCCTTGCTGCAGAAAAACGGGAAAAGATGAAGGAAGAAATGATTGCGAAACTGAAAGAAATGGGCAACTCTGTCTTAGGCCGCTTTGGTATGAGTGTGGACAACTTTAAAACAGTCAAAGATCCAAACACTGGTTCCTATTCTGTCCAATTCCAACGCTGA | 828 | 0.4686 | MVVIEHHDTHDRNANPSTTANDASDGFETASDTDLASDADDIRLEDHKHAEQPQQHHQEEEDQQQKQVEQEQEQEQGDPPSIISSDVASINDEESNQKALVEANEAKTEGNKLFLEGKYEEALVQYELALQVAPDMPSSVEIRSIFHSNSAVCFLKLGKYENTIKECTKALELNPTYVKALVRRGEAHEKLEHFEEALADLKKILEIDPSNDQARKAIRRLEPLAAEKREKMKEEMIAKLKEMGNSVLGRFGMSVDNFKTVKDPNTGSYSVQFQR* | 276 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja4g0607 | 275 | Pfam | Tetratricopeptide repeat | 151 | 176 | IPR019734 | GO:0005515 | |
Lja4g0607 | 275 | SMART | tpr_5 | 103 | 136 | IPR019734 | GO:0005515 | |
Lja4g0607 | 275 | SMART | tpr_5 | 144 | 177 | IPR019734 | GO:0005515 | |
Lja4g0607 | 275 | SMART | tpr_5 | 178 | 211 | IPR019734 | GO:0005515 | |
Lja4g0607 | 275 | ProSiteProfiles | TPR repeat region circular profile. | 178 | 211 | - | - | |
Lja4g0607 | 275 | MobiDBLite | consensus disorder prediction | 14 | 31 | - | - | |
Lja4g0607 | 275 | Gene3D | Tetratricopeptide repeat domain | 91 | 247 | IPR011990 | GO:0005515 | |
Lja4g0607 | 275 | Pfam | Tetratricopeptide repeat | 179 | 211 | IPR001440 | GO:0005515 | |
Lja4g0607 | 275 | ProSiteProfiles | TPR repeat profile. | 178 | 211 | IPR019734 | GO:0005515 | |
Lja4g0607 | 275 | PANTHER | TETRATRICOPEPTIDE REPEAT PROTEIN 1 | 48 | 275 | - | - | |
Lja4g0607 | 275 | ProSiteProfiles | TPR repeat profile. | 144 | 177 | IPR019734 | GO:0005515 | |
Lja4g0607 | 275 | MobiDBLite | consensus disorder prediction | 36 | 73 | - | - | |
Lja4g0607 | 275 | Coils | Coil | 184 | 204 | - | - | |
Lja4g0607 | 275 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
Lja4g0607 | 275 | SUPERFAMILY | TPR-like | 103 | 222 | IPR011990 | GO:0005515 | |
Lja4g0607 | 275 | Coils | Coil | 54 | 74 | - | - | |
Lja4g0607 | 275 | ProSiteProfiles | TPR repeat profile. | 103 | 136 | IPR019734 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja4g0607 | Lja-Chr4 | 5003140 | 5013069 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja4g0607 | 103 | 234 | Calmodulin-binding Proteins | AT3G25230 | 40.000 | 1.59e-15 | 74.3 |