Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0607 ATGGTAGTGATTGAGCACCACGACACTCATGATCGCAACGCCAACCCCTCCACCACCGCCAACGATGCTTCCGACGGCTTCGAAACCGCCAGCGACACCGATCTCGCCAGCGACGCCGACGATATCAGACTGGAAGACCACAAACATGCCGAACAACCGCAGCAGCACCATCAGGAGGAAGAGGACCAGCAGCAGAAGCAGGTAGAGCAAGAGCAAGAGCAGGAGCAGGGTGATCCTCCAAGCATCATTTCCTCCGACGTTGCCTCGATCAATGACGAAGAATCGAATCAGAAAGCATTGGTTGAAGCGAATGAAGCAAAGACAGAAGGGAACAAGCTTTTTCTGGAAGGGAAGTATGAGGAGGCATTGGTGCAGTATGAACTTGCTTTACAAGTTGCGCCAGACATGCCTTCATCTGTGGAAATCCGATCAATTTTCCATTCAAACAGTGCTGTGTGCTTTCTCAAACTAGGAAAATATGAAAACACAATTAAAGAATGCACAAAGGCATTAGAACTGAATCCTACATATGTCAAAGCTTTGGTAAGAAGAGGAGAGGCCCATGAAAAGCTTGAGCATTTTGAAGAGGCCCTTGCTGATCTCAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTAGGAAAGCCATTCGGCGACTTGAGCCCCTTGCTGCAGAAAAACGGGAAAAGATGAAGGAAGAAATGATTGCGAAACTGAAAGAAATGGGCAACTCTGTCTTAGGCCGCTTTGGTATGAGTGTGGACAACTTTAAAACAGTCAAAGATCCAAACACTGGTTCCTATTCTGTCCAATTCCAACGCTGA 828 0.4686 MVVIEHHDTHDRNANPSTTANDASDGFETASDTDLASDADDIRLEDHKHAEQPQQHHQEEEDQQQKQVEQEQEQEQGDPPSIISSDVASINDEESNQKALVEANEAKTEGNKLFLEGKYEEALVQYELALQVAPDMPSSVEIRSIFHSNSAVCFLKLGKYENTIKECTKALELNPTYVKALVRRGEAHEKLEHFEEALADLKKILEIDPSNDQARKAIRRLEPLAAEKREKMKEEMIAKLKEMGNSVLGRFGMSVDNFKTVKDPNTGSYSVQFQR* 276
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0607 275 Pfam Tetratricopeptide repeat 151 176 IPR019734 GO:0005515
Lja4g0607 275 SMART tpr_5 103 136 IPR019734 GO:0005515
Lja4g0607 275 SMART tpr_5 144 177 IPR019734 GO:0005515
Lja4g0607 275 SMART tpr_5 178 211 IPR019734 GO:0005515
Lja4g0607 275 ProSiteProfiles TPR repeat region circular profile. 178 211 - -
Lja4g0607 275 MobiDBLite consensus disorder prediction 14 31 - -
Lja4g0607 275 Gene3D Tetratricopeptide repeat domain 91 247 IPR011990 GO:0005515
Lja4g0607 275 Pfam Tetratricopeptide repeat 179 211 IPR001440 GO:0005515
Lja4g0607 275 ProSiteProfiles TPR repeat profile. 178 211 IPR019734 GO:0005515
Lja4g0607 275 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 48 275 - -
Lja4g0607 275 ProSiteProfiles TPR repeat profile. 144 177 IPR019734 GO:0005515
Lja4g0607 275 MobiDBLite consensus disorder prediction 36 73 - -
Lja4g0607 275 Coils Coil 184 204 - -
Lja4g0607 275 MobiDBLite consensus disorder prediction 1 85 - -
Lja4g0607 275 SUPERFAMILY TPR-like 103 222 IPR011990 GO:0005515
Lja4g0607 275 Coils Coil 54 74 - -
Lja4g0607 275 ProSiteProfiles TPR repeat profile. 103 136 IPR019734 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja4g0607 Lja-Chr4 5003140 5013069 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0607 103 234 Calmodulin-binding Proteins AT3G25230 40.000 1.59e-15 74.3