Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0601 ATGAAATTGGTTCCGGGGTTTCGGTTTCATCCCATGGATGTTGAGTTAGTGAAATTCTATCTGAAGAGGAAAGTCATGGGGAGAAAGCTCCCTCATGATGTTATTGCTGAAGTTAATGTCTACAAGCATGCTCCCTGGGATCTTCCTGATAAGTCTTGTTTGAGAACTGGGGATTTGGAATGGTATTTCTTCTCCCCGACGGAGAAGAAATATGGCAGTGGGGCCAGGATGAATCGGGCTACGGAGATTGGGTTTTGGAAAGTTACTGGGAAGGATAGAGCTGTTCTACATAATAATCAAGTTGTGGGCATGAGAAAAACCCTGATATTTCACACGGGGAAAGCACCTCGTGGGGATAGAACAAATTGGGTTATGCATGAGTATAGGCTTGAAGATAAGGACTTAGCTGACAAAGGAATTGCTCAGGATTCCTATGTGATCTGTAAGGTATTCCAAAAGGAAGGTCCTGGACCCAGGAATGGTGCACAATATGGGAGACCATTTAATGAGGAAGACTGGAATGATGAAGAAATTGGAATACCTTATGTTGATTCATCTGCACCAATTCCCATTTCGTCTATAACATCTAATACTTCTGTTCCAAATGACCAATATCTCCTTGCTGGTGGATGTACTGGGTCAACATCCACATCATGTCTAACGGGAATGATGCCTTCTCCTGGCCTGGAAATTCCTTCACCTCCAAGCAACCAAGCTGTTAACAGTGATGAAGATATTTTATCAATGCTTGACATTTTCAAAGAAGACACATTGCCTGAGGAAAATATTACTGAAGGTGCACCTTCAATTGACTTTTTCGAGGACCTGGGAAACCTGGATTCCTGGGATGCTGCTGGTTTCTCCTCTGTCCAGAATGTTGAGTGTGGCACAAATGGAATGGCCACTACAGGTGATGTTTCAGGGTTTGGTGACTTGGACTTCTTGGAGTTGATTGATCTGGACTCTCCCTTGTTCTGGCAGACTACACTACCTGAAAATTGGAGTCCAGATAAATAG 1017 0.4346 MKLVPGFRFHPMDVELVKFYLKRKVMGRKLPHDVIAEVNVYKHAPWDLPDKSCLRTGDLEWYFFSPTEKKYGSGARMNRATEIGFWKVTGKDRAVLHNNQVVGMRKTLIFHTGKAPRGDRTNWVMHEYRLEDKDLADKGIAQDSYVICKVFQKEGPGPRNGAQYGRPFNEEDWNDEEIGIPYVDSSAPIPISSITSNTSVPNDQYLLAGGCTGSTSTSCLTGMMPSPGLEIPSPPSNQAVNSDEDILSMLDIFKEDTLPEENITEGAPSIDFFEDLGNLDSWDAAGFSSVQNVECGTNGMATTGDVSGFGDLDFLELIDLDSPLFWQTTLPENWSPDK* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0601 338 Gene3D NAC domain 13 155 IPR036093 GO:0003677|GO:0006355
Lja4g0601 338 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 234 323 - -
Lja4g0601 338 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 3 228 - -
Lja4g0601 338 SUPERFAMILY NAC domain 2 153 IPR036093 GO:0003677|GO:0006355
Lja4g0601 338 ProSiteProfiles NAC domain profile. 3 153 IPR003441 GO:0003677|GO:0006355
Lja4g0601 338 PANTHER PLANT NAC DOMAIN PROTEIN 234 323 - -
Lja4g0601 338 PANTHER PLANT NAC DOMAIN PROTEIN 3 228 - -
Lja4g0601 338 Pfam No apical meristem (NAM) protein 5 130 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0601 Lja-Chr4 4968877 4972616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0601 2 336 NAC Transcription Factor Family AT5G09330 42.819 3.03e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja4g0601 NAM 1.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0601 - - gmx:100778933 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0601 4 4968877 4972616 Lja4g0601 4 4968877 4972616 ECH
Lja4g0601 4 4968877 4972616 Lja1g4510 1 58707805 58711296 PCT