Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0598 ATGCCGGCTTGGTGGAACAGAAAGCCATGGAAGAACAAGCAGGAACACGATGATGATGAAGACGGTGAGTATGAGGCGGAGGAGGTGGAGGAAGCACCGCGTTCTGGGCTTCAATTCAATTTCATGAAATCTCCAATCAGCAGCGCAAGGAGCAGTGATAAGAAGAAGAAGAAGAAGATTAAGGATAAGAAGAAGCCCAAGAGTTTCGATGAGGTACTGTATCGGAATTCACCCAGAACCAGCAAGGATTGTGATGGCGGCGCCGCCGCCATGGAGAAGAAAGGGCTTCCGTTGCCTCGCCCTACCACACCCTGCGATCAGGCTTCCATTTCTGGCTCCAGCCTCAGTTCATCTGCCTCTGCTTCGTTCGATGATCATTCAATCTCGCCTCATTTCAACGCTAACAGAGGACAAGAGGAGGTGAAGTTCAATGTGAGGCCAAAAAGCCCTTGTTCAAGAGGACCCACCAGCCCTACATCACCTCTTCACCAAAGGTTGCATGCTTTGAGTCTTGACTCTCCCACAGGAGGAAAGCAAGATGAAGGAACGAGTCAATGTCACCCATTGCCTCTTCCACCGGGCTCTCCTACTAGCCCTTCGGCTCCTTGCAACACGCGGGCAAATGGGGTGTTAGAAAACAATACCTGTAATCTCTCCAAGTGGAAGAAAGGAAAGCTTCTAGGGCGGGGAACGTTTGGACATGTTTATCTGGGATTCAATAGTGAAAATGGACAAATGTGTGCTATAAAAGAAGTCAAAGTTTTCTCTGATGATAAAACATCAAAAGAGTGCCTCAAACAACTTAACCAGGAGATAAATTTGCTTAATCAGTTTTCACATCCGAACATTGTTCAGTACTATGGGAGTGAACTGGGAGAAGAATCACTTTCTGTTTATTTGGAATATGTCTCTGGCGGTTCTATCCATAAATTACTACAAGAATATGGTGCATTCAAGGAACCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTGCCTATCTACATAGTAGGAATACAGTGCACAGGGATATCAAAGGGGCTAATATACTTGTTGATCCAAATGGTGAAATCAAACTAGCAGACTTTGGAATGTCTAAACATATAAACTCTGCTGCCTCAATGCTTTCATTCAAAGGAAGTCCATATTGGATGGCACCTGAGGTTGTGATGAATACAAATGGCTATGGTCTTCCAGTTGATATATGGAGCTTGGGATGCACAATACTTGAAATGGCAACATCGAAACCTCCATGGAGTCAGTTTGAAGGGGTAGCTGCCATATTTAAAATTGGAAACAGCAAAGACATGCCTGAAATCCCTGAGCATCTCTCGGATGATGCAAAGAATTTCATTAAGCAATGTTTACAAAGGGACCCATTAGCTCGGCCAACAGCCCAAAGTTTACTAAACCATCCCTTCATTCGAGATCAATCAGCGACAAAAGTTGCGAATGCCAGCATAACTAGAGATGCTTTCCCTTACATGTCTGATGGAAGCCGGACACCGCCTGTTTTAGAGCCTCATTCCAATCGATCAAGTATAACTACACTTGACGTAGATTATGCAACAAAGCCAGCTCTTGCAGCTGTACGTACATTAAGGAATCCAAGAGATAGCACAAGAACGATTACATCTTTACCAGTATCTCCCTCTTCAAGTCCATTGCGACAGCATAGGCCGACACATAATAGCCCTTTCTTTTCTCCTCCTCATCCATCTTATGCAATGATGGGACAAAGCAGTTACACTTCGAATAACATGCACAAAAATCCAGCGAGATCAAATGCCACTCTCACTCTTGATCCATGGCTTGAAACATCTCGATACAAAGCCCATACACCACCTGGTGGTTCTCCGAGAATGAGATTCATTTGA 1884 0.4448 MPAWWNRKPWKNKQEHDDDEDGEYEAEEVEEAPRSGLQFNFMKSPISSARSSDKKKKKKIKDKKKPKSFDEVLYRNSPRTSKDCDGGAAAMEKKGLPLPRPTTPCDQASISGSSLSSSASASFDDHSISPHFNANRGQEEVKFNVRPKSPCSRGPTSPTSPLHQRLHALSLDSPTGGKQDEGTSQCHPLPLPPGSPTSPSAPCNTRANGVLENNTCNLSKWKKGKLLGRGTFGHVYLGFNSENGQMCAIKEVKVFSDDKTSKECLKQLNQEINLLNQFSHPNIVQYYGSELGEESLSVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLAYLHSRNTVHRDIKGANILVDPNGEIKLADFGMSKHINSAASMLSFKGSPYWMAPEVVMNTNGYGLPVDIWSLGCTILEMATSKPPWSQFEGVAAIFKIGNSKDMPEIPEHLSDDAKNFIKQCLQRDPLARPTAQSLLNHPFIRDQSATKVANASITRDAFPYMSDGSRTPPVLEPHSNRSSITTLDVDYATKPALAAVRTLRNPRDSTRTITSLPVSPSSSPLRQHRPTHNSPFFSPPHPSYAMMGQSSYTSNNMHKNPARSNATLTLDPWLETSRYKAHTPPGGSPRMRFI* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0598 627 MobiDBLite consensus disorder prediction 64 78 - -
Lja4g0598 627 MobiDBLite consensus disorder prediction 539 567 - -
Lja4g0598 627 MobiDBLite consensus disorder prediction 539 572 - -
Lja4g0598 627 ProSitePatterns Protein kinases ATP-binding region signature. 227 250 IPR017441 GO:0005524
Lja4g0598 627 MobiDBLite consensus disorder prediction 1 206 - -
Lja4g0598 627 Pfam Protein kinase domain 222 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0598 627 Gene3D Transferase(Phosphotransferase) domain 1 218 503 - -
Lja4g0598 627 SUPERFAMILY Protein kinase-like (PK-like) 218 562 IPR011009 -
Lja4g0598 627 SMART serkin_6 221 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0598 627 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 603 - -
Lja4g0598 627 ProSiteProfiles Protein kinase domain profile. 221 477 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0598 627 MobiDBLite consensus disorder prediction 150 166 - -
Lja4g0598 627 CDD STKc_MEKK1_plant 220 477 - -
Lja4g0598 627 PANTHER MAP KINASE KINASE KINASE 1 603 - -
Lja4g0598 627 MobiDBLite consensus disorder prediction 104 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0598 Lja-Chr4 4942311 4946870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0598 1 540 MAP Kinase Kinase Kinase AT1G53570 56.667 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja4g0598 Pkinase 1.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0598 K04421 - gmx:100787064 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0598 4 4942311 4946870 Lja4g0598 4 4942311 4946870 ECH
Lja4g0598 4 4942311 4946870 Lja1g4507 1 58633089 58638272 PCT