Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0595 ATGACAGAATCTCAAAACTCCATTCCTTACTTATTCAGATGCCCCATCAGTTTAGACTTGTTCCAAGATCCTGTAACTTTATGCACAGGCCAAACATATGACAGGTCAAATATAGAACAATGGCTGGCTGCTGGAAACCTCACATGCCCAGTCACAATGCAGAAGCTTCATGATCCATTCATTGTTCCGAATCACACACTTCGCCACTTGATTGATCAGTGGCTTCAACTCGGTCCCCAATTTGAACCTGGTAACTCTGCAACTGCAGATGATCCTTTATCTGGTCTGAAACACACCCTTGAATCCCAGGAGAGCAGCTTGGAGAACAAGCTTCAAGCACTTGAGAAAATCAGAGCCCTACCTGATCAGTATTTTTCTTTCAAGAAATCATGTTTCCTCCTATTGGATTTCTTATCACTACTTTTGGAACTAGTTTTTGCAAGAGAAGAAGCTCAAGTATCAAAAAATCATATGGAATTCATAGAGCTAGCTCTTTGTTGTGTCCTAAAATTGCTGCCTCTTGGTAGTTTGGAGCCTCTAAATATGATCAAAGATGAGCCTAAATTTTCCACATTTCTGCTATTATTTGAAAAGGGTACTAACCCGATTAAGAATAGCTTGTGTCAACTTATAGAGTCAGCATCATCATCTCAGACAGAAGAGTTATGTTTTTTTCTTGGAAATTCTCACAAACTAGTGCAAGAGATTGTTCTAGCTGCTCGCCGAAACAGCACGGTTTCTGAGTATGCAGTTAAAGGCATATCAGCACTATGTTCTTTGCAGTCTAACAGGGAGAGTTTAGTGAGAGGAGGAGTGATAGATGGCATTATGACATACATTTCATCAGGTTCTGAAATAAGACAGAAGAATTTGGCACCACTTGCAATGGGAATAGTAAAGAAACTTTTGGAAGTAGAAAGTGCTAGAGAGGCATTGGTGAACCACCCAAATGCTATCAAAACTTTGGTCAACATGGTTTTCAGGGTATCTGATCACGAATGCAGTGAGAGTGCTGTTGAGATACTCTTAATAGTTTGCCATGATTTTGGTAGTGCAAGAGAGGAAGCCATTGGAGCCGGAGTTTTGACTCGGTTACTATTGCTTCTGCAGACTGAGTGCAGTACCACAACAAAATCAAAAGCAGGAATGCTGCTCAAATTACTCAGATCCAAGTGGACTGAGGACCTAAAGCAGTGGTAG 1200 0.4092 MTESQNSIPYLFRCPISLDLFQDPVTLCTGQTYDRSNIEQWLAAGNLTCPVTMQKLHDPFIVPNHTLRHLIDQWLQLGPQFEPGNSATADDPLSGLKHTLESQESSLENKLQALEKIRALPDQYFSFKKSCFLLLDFLSLLLELVFAREEAQVSKNHMEFIELALCCVLKLLPLGSLEPLNMIKDEPKFSTFLLLFEKGTNPIKNSLCQLIESASSSQTEELCFFLGNSHKLVQEIVLAARRNSTVSEYAVKGISALCSLQSNRESLVRGGVIDGIMTYISSGSEIRQKNLAPLAMGIVKKLLEVESAREALVNHPNAIKTLVNMVFRVSDHECSESAVEILLIVCHDFGSAREEAIGAGVLTRLLLLLQTECSTTTKSKAGMLLKLLRSKWTEDLKQW* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0595 399 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Lja4g0595 399 Coils Coil 97 120 - -
Lja4g0595 399 PANTHER OS02G0542800 PROTEIN 7 391 - -
Lja4g0595 399 Gene3D - 106 398 IPR011989 -
Lja4g0595 399 CDD RING-Ubox_PUB 12 54 IPR045210 -
Lja4g0595 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Lja4g0595 399 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Lja4g0595 399 SUPERFAMILY ARM repeat 180 388 IPR016024 -
Lja4g0595 399 SUPERFAMILY RING/U-box 5 76 - -
Lja4g0595 399 PANTHER WDSAM1 PROTEIN 7 391 IPR045185 GO:0061630
Lja4g0595 399 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0595 Lja-Chr4 4932666 4934246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0595 8 394 U-box Gene Family AT3G19380 33.416 8.12e-42 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0595 - - lja:Lj1g3v1318260.1 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0595 4 4932666 4934246 Lja4g0595 4 4932666 4934246 ECH