Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0590 ATGGTAGTTGACCCTTCTTGTTGTCTTTTGTTTAATCAGGCTAATAAGAAAATTGAAGATGCTAAGCTTGCAAGAGATTTCCAAACCACGTTACAAGAATTTCAGAAAGTACAACAACTTGCTTCTGAGCGTGAATCGACTTACACCCCGGCTTCCACTTCTTCTCCTTTACCAACAAGCTCTGGCGCTGGTGAAGAATCAGTTGAGGTAGACTTGGAAAGCAGACCTTTTATCGGAGAACAGAAGAGGCAAGAGATACTTCTGTTGGATAATGAATTATCCTTCAATGAGGCTATGATTGATGAAAGAGATCAGGGTATCCGAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTCAAGGATCTTGTTGTTCTGGTTCATGATCAGGGGATTGTTATTGATGACATTCACTCAAATATCGATGCTTCTGCCGGTGCAACATCCCAAGCTAAGGTTCAGCTAGCCAAAGCTTCCAAAAGTGTGAAATCAAAAACTAAATGGTGTTGGTGGGTGCTTGTAATATTTGTGGCAGTGCTGGTCATCTTACTTCTTGTACTCATTCTTTAG 573 0.4066 MVVDPSCCLLFNQANKKIEDAKLARDFQTTLQEFQKVQQLASERESTYTPASTSSPLPTSSGAGEESVEVDLESRPFIGEQKRQEILLLDNELSFNEAMIDERDQGIREVEEQIGQANEIFKDLVVLVHDQGIVIDDIHSNIDASAGATSQAKVQLAKASKSVKSKTKWCWWVLVIFVAVLVILLLVLIL* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0590 190 Pfam SNARE domain 134 185 IPR000727 -
Lja4g0590 190 CDD SNARE_Qa 100 158 - -
Lja4g0590 190 PANTHER SYNTAXIN 13 189 IPR045242 -
Lja4g0590 190 SMART tSNARE_6 92 159 IPR000727 -
Lja4g0590 190 SUPERFAMILY t-snare proteins 15 152 IPR010989 GO:0016020|GO:0016192
Lja4g0590 190 MobiDBLite consensus disorder prediction 42 71 - -
Lja4g0590 190 Gene3D - 10 54 - -
Lja4g0590 190 Gene3D - 91 190 - -
Lja4g0590 190 PANTHER SYNTAXIN-22-LIKE 13 189 - -
Lja4g0590 190 MobiDBLite consensus disorder prediction 42 62 - -
Lja4g0590 190 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 97 159 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0590 Lja-Chr4 4901975 4903281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0590 15 177 SNARE and Associated Proteins AT5G46860 58.896 3.67e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0590 - K08488 gmx:100787141 248.054