Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0589 ATGAAGGTGCAAGAAGGGTGTGAGGTTGAGGCCATTAGCATCAACTACAAGATTCACACACACAAAACAGATCACCCTTTTAAAGTCTTCAACAAATCCCCACAAAAAGGAGATGATCAAGGACCAGAAGAGGAAGCAAAAGGTGAAAAAAGTTGCAGTGGAGTTAAGCATGTTCTCAAGAATGTGAGTTTCCAGGCCAGGCCATGGGAAATCCTAGCCATTGTTGGTCCAAGTGGAGCTGGAAAATCTTCACTGCTTGAGATCCTTGCTGGTAAACACAGTCCACACAGTGGAACTGTGTTGGTGAACCACAAGCCTGTGGACAAAGCTCAGTTCAAAAAGCTTTCAGGGTATGTTACACAGAAGGACACTTTGTTCCCTTTGCTTACAGTTGAAGAAACCATGATGTTCAGTGCAAAGCTAAAGCTAAAGCTTCCACCAGAGCAACTTCACTCCAGGGTGAAGTCACTGATTCAGGAGCTTGGGCTTGGCCATGTTGCTGGAACCAGAATTGGTGACGAAAGGGTCAGAGGTATATCTGGTGGAGAGAGGAGAAGAGTGTCTATTGGTGTTGAAGTGATACATGATCCAAGAGTGCTGATTCTTGATGAACCAACTTCAGGGTTGGATAGTTCCTCTGCTCTGCAAATTCTTGGCATGCTTAAGGTCATGGCTGAGACTAGGGGCAGAACCATAATCCTTAGTATCCATCAACCTGGGTTCAGAATTGTGAAGCTGTTCAGTTCATTGTTGTTGTTAGCCAATGGCTCTGTGTTGCACCATGGCAGTGCAGATTTGCTTGGTGTGAATCTGAGATTGATGGGTCTAGAGCTTCCCCTGCATGTTAATGTGGTTGAATTTGCCATTGACTCCATTGAAACCATTCAGGAACAGGAAATATGTGAGGTGGTTCAGCCAAGGCAATTGCTAGGGACAGTTCAGCAGAAGAAAGGTGATCATGATGAACAACAACCAGCTGAGGCTAAAACTAAGAGTGGTAAGTTCACACTGCAGCAGCTTTTTCAACAATCCAAGGTAATTGATGAGGAAACAATCAATGCTGGAGTGGATTATTCTTGTGATTTTGCAAATTCTAGATTTAGAGAAACTATGATTCTCACTCATAGGTTCTCCAAAAACATCTTTCGTACAAAAGAGCTCTTTGCATGTAGAACAATTCAGATGCTGATTGCTGGGCTTGTTTTGGGGTCCATCTTTTGTAACCCCATGGATGGTATAGAAGGAGTAGCAGAAAGGGTGGGTCTATTTGCTTTCATATTAACTTTTTTGTTGTCAAGCAGCATAGAAGCTCTACCTATTTTTCTGCAAGAAAAGGAGATTCTAATGAAGGAAACTTCTAGTGGAAGCTACAGGGTCTCATCCTATGCTATTGCCAATGGCCTAGTTTACTTGCCATTTCTTCTGATCCTGGCCATTTTGTTCACAGTGCCATTATACTGGCTTGCTGGGCTCAACAAAAATTTCATGGCTTTTCTGCACTTTTTGCTGCTGATATGGCTGATTCTCTACACAGCAAATTCAGTTGTGGTGTGTTTCAGTGCTTTGGTGCCTAATTTCATTGTTGGGAATTCAGTGATTGCTGGTGTTATAGGGTCTTTCTTCTTGTTCTCAGGATACTTCATATCAAAGAATGAGATTCCTAATTACTGGGTTTTCATGCATTATATATCTCTGTTTAAGTATCCCTTTGAAGGGTTTCTGATCAATGAGTTCTCCAAGTCAGGGAAGTGCCTGAGTTACATGTTTGGGGAATGTGTGATGACGGGTGAGGATGTGCTCAAAAAAGAAGGTTATGGAGGAGAGAGCAGTAGATGGAAGAATGTTGGAGTCACTGTGTGCTTCATCTTTTTTTACAGGTTCATTTCTTACATCATTCTAAGATACAAATGTTCACAGAGAGGGTTGTCATCATCTAAACTCTAA 1944 0.4223 MKVQEGCEVEAISINYKIHTHKTDHPFKVFNKSPQKGDDQGPEEEAKGEKSCSGVKHVLKNVSFQARPWEILAIVGPSGAGKSSLLEILAGKHSPHSGTVLVNHKPVDKAQFKKLSGYVTQKDTLFPLLTVEETMMFSAKLKLKLPPEQLHSRVKSLIQELGLGHVAGTRIGDERVRGISGGERRRVSIGVEVIHDPRVLILDEPTSGLDSSSALQILGMLKVMAETRGRTIILSIHQPGFRIVKLFSSLLLLANGSVLHHGSADLLGVNLRLMGLELPLHVNVVEFAIDSIETIQEQEICEVVQPRQLLGTVQQKKGDHDEQQPAEAKTKSGKFTLQQLFQQSKVIDEETINAGVDYSCDFANSRFRETMILTHRFSKNIFRTKELFACRTIQMLIAGLVLGSIFCNPMDGIEGVAERVGLFAFILTFLLSSSIEALPIFLQEKEILMKETSSGSYRVSSYAIANGLVYLPFLLILAILFTVPLYWLAGLNKNFMAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVIAGVIGSFFLFSGYFISKNEIPNYWVFMHYISLFKYPFEGFLINEFSKSGKCLSYMFGECVMTGEDVLKKEGYGGESSRWKNVGVTVCFIFFYRFISYIILRYKCSQRGLSSSKL* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0589 647 Gene3D - 47 273 IPR027417 -
Lja4g0589 647 Pfam ABC-2 type transporter 370 578 IPR013525 GO:0016020|GO:0140359
Lja4g0589 647 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 2 636 - -
Lja4g0589 647 CDD ABCG_EPDR 49 262 - -
Lja4g0589 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 265 IPR027417 -
Lja4g0589 647 ProSitePatterns ABC transporters family signature. 179 193 IPR017871 GO:0005524
Lja4g0589 647 Pfam ABC transporter 59 207 IPR003439 GO:0005524
Lja4g0589 647 SMART AAA_5 68 257 IPR003593 -
Lja4g0589 647 PANTHER ABC TRANSPORTER G FAMILY MEMBER 5 2 636 - -
Lja4g0589 647 MobiDBLite consensus disorder prediction 25 52 - -
Lja4g0589 647 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 280 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0589 Lja-Chr4 4893952 4896198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0589 57 299 Calmodulin-binding Proteins AT2G36910 25.591 5.21e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0589 K05681 - gmx:100789722 1037.33