Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0583 ATGGAAGATGAGAGTCACAATAATAACACTTTGCCAAATAATGGGTTTAGCTCAGGAAGCCCTGAAAGTCCTTGCTTAAAGCCAAACAACAATAATCACCATAACAAAGAACAGGACCGTTTTCTCCCTATAGCCAATGTTGGTAGAATCATGAAAAAAGTGATTCCTGCAAATGGGAAAATCTCAAAGGATGCTAAAGAGACAGTTCAAGAATGTGTGTCAGAGTTCATTAGCTTTGTCACAGGGGAAGCATCTGACAAGTGTCAAAGGGAAAAGAGGAAAACCATCAATGGTGATGATATCATATGGGCCATCACAACCTTAGGATTTGATGATTATGTGGAGCCATTGAAAACTTACCTTGTGAAATACAGAGAGATTGAAGGAGAAAAGGTGAACACACCAAAGCAACAACAACAACAACGTTCTGATCAACAGAGGCTACTTCAACATCAACATAGCCAAGATGAAAATAATATTAATAACCAACCATTCAACTGTGTATATACAACCTCAACAAATCTCATGTCTCATCATCAGCCTCCTTTTGTGGCGGCGGATCAGCCATTTCCACTCCCTTTCTCAACAAATTCAATTCAAAAACAGTTAAGGCCACAGGACCAGATTGATTCAGTGGGGCATTGGTATGAGTAG 654 0.396 MEDESHNNNTLPNNGFSSGSPESPCLKPNNNNHHNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFDDYVEPLKTYLVKYREIEGEKVNTPKQQQQQRSDQQRLLQHQHSQDENNINNQPFNCVYTTSTNLMSHHQPPFVAADQPFPLPFSTNSIQKQLRPQDQIDSVGHWYE* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0583 217 Gene3D Histone, subunit A 28 165 IPR009072 GO:0046982
Lja4g0583 217 MobiDBLite consensus disorder prediction 7 31 - -
Lja4g0583 217 MobiDBLite consensus disorder prediction 1 36 - -
Lja4g0583 217 ProSitePatterns NF-YB/HAP3 subunit signature. 72 88 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lja4g0583 217 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Lja4g0583 217 PRINTS CCAAT-binding transcription factor subunit A signature 107 125 - -
Lja4g0583 217 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Lja4g0583 217 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 4 206 - -
Lja4g0583 217 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 206 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lja4g0583 217 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 41 105 IPR003958 -
Lja4g0583 217 SUPERFAMILY Histone-fold 38 155 IPR009072 GO:0046982
Lja4g0583 217 MobiDBLite consensus disorder prediction 131 164 - -
Lja4g0583 217 MobiDBLite consensus disorder prediction 133 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0583 Lja-Chr4 4859938 4860591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0583 15 215 CCAAT-HAP3 Transcription Factor Family AT2G13570 65.877 5.85e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja4g0583 CBFD_NFYB_HMF 3.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0583 K08065 - gmx:100778216 311.227