Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0578 ATGGCGACCAACCCCAGGAGCACAGCGAAGAAACCAGTCAGCCTCAACGACAGCCACTATCGCTTCCTCCAAGACCTCTCCGCTCCGCCCAAACGCTCCTCCTCCTCCGTCACCACCACCGATGAAGACGAAGACGATCAACCTACCCAACGCCGAAACAACCAACCCCCACCAGATGATACTTTTCCTCAATTTTCTGCAATCACCGACTTCGATTCTCCAATCGGTCAAAACTCGCCGGAGAATCCCGAACCGAGCAAGGAAGAAGAAGCAACACCTCCACCTGAGGAAAATTTTCAGTGTTCGGCTATTTCTGCCCCTAGTCAAAACTCACCGGAAAAACACGAACCGAGCAAGGAAGAAGAAGCTCCACCTCCACCTCCACCTCCACCTGAGGAAGATTTCCAGTTTTCGGCTATTTCTTCCCTTAAGGACGAGAAGAAGACGAAGGTGAAGGTGCAAGGTCGACGCCGTCTTTGCAAGGTTGCGTATACCGATGATGCGAGTGAGAACGTGGTGGTTGATGAGCATAGGTTTGATGACATTGTTGATCTTGATACGCCTGTTCCGGCGCCGAAAAGTGTGGTCCGGATTGAGGAGAGTGGGGGTAGGAGTGAGATTAGGGATATTTTGAATGAGCTGAGCTCTAGGTTTGAGTTGTTATCTATGGAGAGGAAGCCGGAGAGGAAGGTGGTTGAGGGTTTTGTTGGAGGTGAACTGAGCTCCAAGTTTGAGTTGTTATCTGAGGAGAGGAAGCCGGTTGAGGGTTTAGTTGGAGGTAAACTGAGCTCCAAGTTTGAGTTGTTATCTGAGGAGAGGAAGCCGGAAAGGAAGCCTGTTGAGGGTTTAGTTGGAGGTGAATTGAGCTCCAAGTTTGAGCTGTTATCTGAGGAGAGGAAGCCGGTGCAGAAGCCTGTTGAGGGTTTAGTTGGAAAGAAAGAAGCTTTCGAAGATGAGGGTTTGGAGTTTGGGAGTGCGGGGTCTTCATTTTCTCAACAGCAGGATAATGAGCTTGATGGTGGTAGCGGCCGTGGTGGGGGTGGTTTGGAGGATGATTCAGATGATTCTGTTCAAGAGTTGGATCATTTTGAGGCTGTAGATGATGGTTCTATAACTTTGATTGGCCCAATATCTACATATAAGTTGCCGGGTAAAATTGGGAAGATGTTGTATCCGCATCAGCGGGATGGGTTGAATTGGCTATGGTCTTTGCATTGTCTGGGTAAAGGTGGAATATTGGGAGATGACATGGGTTTGGGGAAAACAATGCAGATTTGTGGCTTTCTAGCTGGACTGTTTCATTCCCGTTTAATTAGAAGGGTGTTGGTTGTGGCCCCCAAAACCCTACTGCCTCATTGGATCAAAGAATTATCAGTTGTTGGTCTCGCTGAGAAGACAAGAGAATATTTTGGAACTTCCATGAAACTCAGAGAATATGAACTTCAGTACATACTTCAGGACAAAGGTGTTCTTCTCACAACATATGATATTGTCCGTAACAATTCTAAGTCATTACGGGGACATAGTCATTTTGATGATGATGAAAGTGATGACCCTACCTGGGACTACATGATACTTGATGAGGGGCACCTTATTAAGAATCCAAGCACACAGAGAGCTAAAAGTTTGCTCGAGATACCCAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTTAAGGAGTTGTGGGCATTGTTCAATTTCTGCTGCCCTGAGTTGCTTGGTGACAACAAATGGTTTAAAGAAAAATTTGAATCACCAATACTTCGTGGAAATGATAAGAATGCAACTGACAGAGAGAAGCGTGTTGGTTCACATGTGGCAAAGGAGTTAAGAGATCGTATTCAGCCTTACTTCTTGAGACGTCTAAAGAGTGAGGTTTTCAATCAAGATGACAAGAACAAAACTGCAGAACTTTCTCAAAAACAAGAAATCATTGTGTGGCTTCGATTGACCAGTACTCAGCGGCATCTTTATGAAGCATTTTTGAAGAGTGAGATTGTTGTCTCAGCATTTGATGGCTCACCACTTGCTGCCATTACGATTTTGAAGAAAATATGTGATCATGCACTTCTAATGACTAAGCGGGCAGCTGAGGATGTGCTTGAAGGGATGGACTCAGAGCTAAAGCCCGAAGAGGCTAATGTTGCAGAAAAATTGGCGATGCACATAGCAGATGTTGCAGAAACAGATGAGTTTAAAGATGTGCATGATGCCTCGTGCAAAATTTCCTTCATTATGTCATTATTGGATAATTTGATCCCTGAAGGGCATAATGTGCTCATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATTCAGGAAAACCTAGCAGCCAGAAGTTATGACTTTTTACGAATTGATGGCACAACAAAAGCCAGTGACAGAATAAAGATTGTTAATGATTTCCAAGATGGTATTGGAGCTCCTATATTTCTCTTGACAACTCAGGTTGGTGGTTTAGGACTGACACTTACAAGAGCAGATCGGGTGATTGTGGTTGATCCTGCTTGGAACCCAAGTACGGACAATCAAAGTGTTGACCGTGCTTATCGTATTGGTCAAAAGAAAGATGTTATTGTCTATAGACTGATGACATGCGGAACCGTTGAAGAAAAGATATACAGGAAGCAGGTATATAAAGGAGGATTGTTCAAAACTGCTACTGAACAAAAAGAACAAACTCGGTATTTTACCCAGCAGGATCTTAAGGACCTTTTCAGCCTCCCAAAAGAAGGATTTGATGTATCTGTTACCCAGCGGCAATTAAATGAGAAGCATGATCGTCTTAAAGTGGATGATGCTTTCAAAGCCCATATAGAGTTCCTGAAAAGTCTCGGCATAGCTGGTGTTAGTCACCACAGTTTGCTGTTTTCCAAGACAGAACCAGTTCAAGCTGCTCCAGAGGAGGATGAAGTAACAAGGAATCATAGGCCTCCCTATATTGGATCTTCAAAGCCATCTTCGCATGATCTTGTTGTTGATGGAGCTGAGTTTGCGTTTAATCCAAAGGATGTTAACTTAAGCAAAAAAGGTTCTTCTCCAAGCAGTGCTGGTAAATTGTCGGAGTCAGAAATCAAGGATCAAATTAAAAGGCTCTCTCTCACACTTTCAAATACGGCAATGGTTTCTAAATTACCTGACAAGGGGGAGAAACTGCATAAACGGATGGCGGAGCTGAATGTAATGCTCACTAAACTGAAGATGGAACAAAGAGAAATAATTGATTTGGATGATTTTACTAGTGACTTTCAGAGAGTGTTGAATGTATAG 3285 0.4384 MATNPRSTAKKPVSLNDSHYRFLQDLSAPPKRSSSSVTTTDEDEDDQPTQRRNNQPPPDDTFPQFSAITDFDSPIGQNSPENPEPSKEEEATPPPEENFQCSAISAPSQNSPEKHEPSKEEEAPPPPPPPPEEDFQFSAISSLKDEKKTKVKVQGRRRLCKVAYTDDASENVVVDEHRFDDIVDLDTPVPAPKSVVRIEESGGRSEIRDILNELSSRFELLSMERKPERKVVEGFVGGELSSKFELLSEERKPVEGLVGGKLSSKFELLSEERKPERKPVEGLVGGELSSKFELLSEERKPVQKPVEGLVGKKEAFEDEGLEFGSAGSSFSQQQDNELDGGSGRGGGGLEDDSDDSVQELDHFEAVDDGSITLIGPISTYKLPGKIGKMLYPHQRDGLNWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRVLVVAPKTLLPHWIKELSVVGLAEKTREYFGTSMKLREYELQYILQDKGVLLTTYDIVRNNSKSLRGHSHFDDDESDDPTWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDNKWFKEKFESPILRGNDKNATDREKRVGSHVAKELRDRIQPYFLRRLKSEVFNQDDKNKTAELSQKQEIIVWLRLTSTQRHLYEAFLKSEIVVSAFDGSPLAAITILKKICDHALLMTKRAAEDVLEGMDSELKPEEANVAEKLAMHIADVAETDEFKDVHDASCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQENLAARSYDFLRIDGTTKASDRIKIVNDFQDGIGAPIFLLTTQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEQKEQTRYFTQQDLKDLFSLPKEGFDVSVTQRQLNEKHDRLKVDDAFKAHIEFLKSLGIAGVSHHSLLFSKTEPVQAAPEEDEVTRNHRPPYIGSSKPSSHDLVVDGAEFAFNPKDVNLSKKGSSPSSAGKLSESEIKDQIKRLSLTLSNTAMVSKLPDKGEKLHKRMAELNVMLTKLKMEQREIIDLDDFTSDFQRVLNV* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0578 1094 MobiDBLite consensus disorder prediction 1 136 - -
Lja4g0578 1094 Gene3D - 648 944 IPR027417 -
Lja4g0578 1094 MobiDBLite consensus disorder prediction 323 355 - -
Lja4g0578 1094 Pfam Helicase conserved C-terminal domain 746 858 IPR001650 -
Lja4g0578 1094 PANTHER SNF2/RAD54 FAMILY MEMBER 362 979 - -
Lja4g0578 1094 CDD SF2_C_SNF 738 869 - -
Lja4g0578 1094 SMART helicmild6 775 858 IPR001650 -
Lja4g0578 1094 MobiDBLite consensus disorder prediction 51 82 - -
Lja4g0578 1094 Gene3D - 377 647 IPR038718 -
Lja4g0578 1094 Pfam SNF2-related domain 394 694 IPR000330 GO:0005524|GO:0140658
Lja4g0578 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 641 917 IPR027417 -
Lja4g0578 1094 MobiDBLite consensus disorder prediction 967 993 - -
Lja4g0578 1094 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 402 576 IPR014001 -
Lja4g0578 1094 MobiDBLite consensus disorder prediction 98 112 - -
Lja4g0578 1094 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 626 IPR027417 -
Lja4g0578 1094 MobiDBLite consensus disorder prediction 325 339 - -
Lja4g0578 1094 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 749 908 IPR001650 -
Lja4g0578 1094 PANTHER OS04G0692700 PROTEIN 362 979 - -
Lja4g0578 1094 SMART ultradead3 385 587 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0578 Lja-Chr4 4831066 4839119 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0578 744 912 RAD5 or RAD16-like Gene Family AT5G22750 34.320 3.62e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja4g0578 SNF2_N 1.2e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0578 K20093 - gmx:100779283 1402.88