Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0576 ATGCAGAACTTGAAGTTCTTTATCCGGAACAAGATCTCCAACAAAATCATACACTATAGCAAGCTTCATTATTCTGGAATCAATAGTTCTTCTCTTCCTCTGTTTCTAGAGGAAGAGAAAAAGGCCAAGGTGAAGCTGCAGCAAGGTGGAATACGCAGCCTCTGCAAGGTTGCGTATGCTGGCACCGGCGAGAACGTGGTGGCTGTTGAGAATGATTTGAGCTTGAAATTTGAGTTTTTATCTGTTGTGAGGAAGTGGTTGGTGAAGCCTGTTGAGGGTTTGCTTGGAAAAAAAGAAGCTTGTGAAGATGATGAGGTTGCAGTTTCAGGGTCTTCATTTTCTCCACAACAAGATAATGAGAATGATGATGGTGGTGGTAGTGGTGGTGGTTTGGAGTATGATTCAGATGATTATGTTATAAAGTTGGATCATTTTGAGCCTGTGAATGATGGTCCTAATGGCCCAAAATATACATTTAAGTTGCCTGGTAAAATTGAGAAGATGTTGTATCCACATCAGTGGGATGGGGTGAAGTGGCTTTGGTTTTTGCACTGTCAGGGTAAAGGTGGAATATTGGCAGATGACATGGGTTTGGGGAAGACAATGCAGATTAGTGCCTTTCTAGCTGGACTATTTCATTCTGGTTTAATTACAAGAGTATTGGTTGTTGCCCCACAAACCATACTGCCCCATTGGATCAAAGAATTATCACTTGTTGGTCTCTCTGAGAAGACAAGAGAATATTCTGGAACTTCCACAAAAGCCAGAGAACATGAACTTCAGTACATACTTCAAGGCAAAGGTGTTCTTCTCACAACATATGATATTGTTCGTAAAAATTCTAAGTCCTTCCGGGGAGGACATAGTTATTTTGATGATGGCAGAATTGAAGATGGCCTTACCTGGGACTACATGATGCTTGATGAGGGGCACTTTATTAAGAATCCAAACACAGAGAGAGCTAAAAGTTTGCTCAACATACCCAGTGCTCATCGCATTATCATTAGTGGCACGCCATTGCAAAATAATCTTAAGGAGTTGTGGGTATTGATAAATTTCTGCTGCCCTGAGTTGCTTGGTGATGACTACAAATGGTTTAAAAAAAAGTTTGAATCACCAATACTTCGTGGAAATGATAAGAATGCATCTGGCAGAGAGAAGCTTATTGGTTCACATGTTGCAATGGAGTTAAGAGATCGTATTCAGCCTTACTTCTTGAGACGTCTAAAGAATGAGGTTTTCAATCAAGATGACAATAAACTTTCTCAGAAACAAGATATAATCGTGTGGCTTCGATTGACCAGTATTCAGCGGCATCTTTATGAAGCATTTTTGAGGAGTGAGATTGTTGTCTCAGGCTCAGCATTTGATGACTCACCACTTACTGCCATTTCGATTTTGAAGAAAATATGTGATCATCCACTTTTATTGACAAAGCGGGCAGCTGAGGATGTGCTTCAAGGGATGGACTCAATGCTAAAGCCAGAAGAGGCTATTGTTGCAGAAAAATTGGCGATGCACATAGCAGATGTTGCAGAAACAGATGAGTTTAAAGACGTGATTGATGCATCGTGCAAAATTTCCTTCATAATGTCATTATTGGATAATTTGATCCCTGAAGGTCATAGTGTGCTTATCTTTTCTCAGACTCGCATGATGCTTAATCTTATTCAGGAAAACCTAAAATCTAAAGGTTATGACTTTTTACGGATGGATGGCACAACGAAAGCCAGTGACAGAAAACAGATTGTTAATGTAACTCCTATATTTCTATTGACATCTAAGGTTGGTGGTTTAGGACTGACACTTACTAGAGCAGATCGTGTAATTGTGGTTGATCCTGCTTGGAACCCAAGTACGGATAGTCAAAGTGTTGACCGCGCACATCGTATTGGTCAAAAGAAAGATGTTATTGTGTATAGACTGATGACATGCGGAACCGTTGAGGAAGTGATATACAAGAAGCAGGTATATAAAGGAGGATTGTTCAAAGCTGCTACTGAAAATGGACAAAAAAGTCGGTACTTTAACCAGCAGGATATTTATAAGATTTTCAACCTCCCAGAAGAAGGATTTGATGTATCTGTTACGCAGAGGAAAATGAATGAGGAGCATGATCTTGAACATGAAGTGGATGACACTTTCAAAGGTCATTTGGAGTTCCTTAAAAGTCTCGGCATAGCCGGTGTTAGTCACCATAATTTGCTGTTTTCCAAGACAGAACCGGCTCCTGCTGATGAAGTAACAAGAAATCTTATTCATGTGGCTTTTTCGAATGGTATGACTAGAAGGTGGTGGCTAATTCAGAACCAGCTGCTTTTGGAATCCAGGTAA 2334 0.4023 MQNLKFFIRNKISNKIIHYSKLHYSGINSSSLPLFLEEEKKAKVKLQQGGIRSLCKVAYAGTGENVVAVENDLSLKFEFLSVVRKWLVKPVEGLLGKKEACEDDEVAVSGSSFSPQQDNENDDGGGSGGGLEYDSDDYVIKLDHFEPVNDGPNGPKYTFKLPGKIEKMLYPHQWDGVKWLWFLHCQGKGGILADDMGLGKTMQISAFLAGLFHSGLITRVLVVAPQTILPHWIKELSLVGLSEKTREYSGTSTKAREHELQYILQGKGVLLTTYDIVRKNSKSFRGGHSYFDDGRIEDGLTWDYMMLDEGHFIKNPNTERAKSLLNIPSAHRIIISGTPLQNNLKELWVLINFCCPELLGDDYKWFKKKFESPILRGNDKNASGREKLIGSHVAMELRDRIQPYFLRRLKNEVFNQDDNKLSQKQDIIVWLRLTSIQRHLYEAFLRSEIVVSGSAFDDSPLTAISILKKICDHPLLLTKRAAEDVLQGMDSMLKPEEAIVAEKLAMHIADVAETDEFKDVIDASCKISFIMSLLDNLIPEGHSVLIFSQTRMMLNLIQENLKSKGYDFLRMDGTTKASDRKQIVNVTPIFLLTSKVGGLGLTLTRADRVIVVDPAWNPSTDSQSVDRAHRIGQKKDVIVYRLMTCGTVEEVIYKKQVYKGGLFKAATENGQKSRYFNQQDIYKIFNLPEEGFDVSVTQRKMNEEHDLEHEVDDTFKGHLEFLKSLGIAGVSHHNLLFSKTEPAPADEVTRNLIHVAFSNGMTRRWWLIQNQLLLESR* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0576 777 PANTHER OS04G0692700 PROTEIN 153 745 - -
Lja4g0576 777 MobiDBLite consensus disorder prediction 109 123 - -
Lja4g0576 777 CDD SF2_C_SNF 518 643 - -
Lja4g0576 777 Gene3D - 427 717 IPR027417 -
Lja4g0576 777 PANTHER SNF2/RAD54 FAMILY MEMBER 153 745 - -
Lja4g0576 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 706 IPR027417 -
Lja4g0576 777 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 529 682 IPR001650 -
Lja4g0576 777 MobiDBLite consensus disorder prediction 107 128 - -
Lja4g0576 777 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 181 357 IPR014001 -
Lja4g0576 777 Gene3D - 147 426 IPR038718 -
Lja4g0576 777 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 408 IPR027417 -
Lja4g0576 777 SMART ultradead3 164 366 IPR014001 -
Lja4g0576 777 Pfam SNF2-related domain 187 476 IPR000330 GO:0005524|GO:0140658
Lja4g0576 777 Pfam Helicase conserved C-terminal domain 526 632 IPR001650 -
Lja4g0576 777 SMART helicmild6 555 632 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0576 Lja-Chr4 4811258 4817214 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0576 165 687 RAD5 or RAD16-like Gene Family AT5G05130 23.144 5.81e-33 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja4g0576 SNF2_N 2.7e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0576 K20093 - gmx:100779283 1014.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0576 4 4811258 4817214 Lja4g0576 4 4811258 4817214 ECH