Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0574 ATGTTTTCTTTGTGGCTTGTTTCCTTTCCCATCAATTCAAATGAATATTTAACTGTTTTCCTTAAAGTTGAACCTATAAGATTGATCTTTTTGGTTTCAATTCTTCTATCCATTATAGTTGACATTAAATATCTGAGTGAGTATTCACCATGGTATTGTGGTTTTTGCAGGAAAGAGCAACACAACACCAATTGTCATTGCGGTAGTTGTGGTAAGCTTTCCAATGGACTAGAGGTTGCTGTGAAAAGGTTGTCTACAAATTCAGGACAAGGGGAGACAGAATTCAAGAACGAGGTGCAGTTGGTGGCCAAGGTACAACACAGAAATTTAGTCAGGCTACTTGGTTTCAGTTTGGAAAGAGAAGAGAAGTTACTGGTCTATGAGTTTGTTCCCAATAAAAGCCTTGACTACTTTATTTTTGATCCAGTTAAGCTTGCACATTTAGATTGGGAAAGGCGGTATAAAATCATAGGAGGCATTGCCAAAGGCCTTCTTTACCTTCATGAGGATTCAAGACTGCGTATTATTCATCGCGATCTCAAAGCAAGTAACATTCTCTTAGATGAAGAGATGAATCCTAAGATATCGGATTTTGGAATGGCAAGATTGTTTGCTGTGGATCAAAGTCAAGGTAACACAAGTAGAGTTGTGGGAACATTAGGATATATGGCTCCTGAGTATGTCAGGGAAGGATTACTCTCAGTGAAGTCAGATGTTTATAGCTTTGGCATACTGGTTCTAGAGATTGTAAGTGGCCAGAAAAACAGTGGCTTCCATAACGGAGAGTATCTAATAAGCTTTGTCTGGAAAAACTGGAGGGAGGGAACATCATTGAATCTTGTGGACCCCACATTGAATAAAGGCTCAAGAAATGAAATAATGAGATGTATCCACATTGGTTTACTCTGTGTTCAGGGAAACTTAGCTGACAGACCAACCATGGCTTCTGTTGTACTGATGCTTAACAGTTACTCTCTAAGACCACTTACAATGGATGTTTAG 1002 0.3892 MFSLWLVSFPINSNEYLTVFLKVEPIRLIFLVSILLSIIVDIKYLSEYSPWYCGFCRKEQHNTNCHCGSCGKLSNGLEVAVKRLSTNSGQGETEFKNEVQLVAKVQHRNLVRLLGFSLEREEKLLVYEFVPNKSLDYFIFDPVKLAHLDWERRYKIIGGIAKGLLYLHEDSRLRIIHRDLKASNILLDEEMNPKISDFGMARLFAVDQSQGNTSRVVGTLGYMAPEYVREGLLSVKSDVYSFGILVLEIVSGQKNSGFHNGEYLISFVWKNWREGTSLNLVDPTLNKGSRNEIMRCIHIGLLCVQGNLADRPTMASVVLMLNSYSLRPLTMDV* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0574 333 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 71 329 - -
Lja4g0574 333 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 71 329 - -
Lja4g0574 333 ProSiteProfiles Protein kinase domain profile. 42 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0574 333 Gene3D Phosphorylase Kinase; domain 1 55 129 - -
Lja4g0574 333 SMART serkin_6 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0574 333 CDD STKc_IRAK 70 322 - -
Lja4g0574 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Lja4g0574 333 Pfam Protein tyrosine and serine/threonine kinase 74 318 IPR001245 GO:0004672|GO:0006468
Lja4g0574 333 Gene3D Transferase(Phosphotransferase) domain 1 130 328 - -
Lja4g0574 333 SUPERFAMILY Protein kinase-like (PK-like) 71 321 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0574 Lja-Chr4 4788066 4790291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0574 71 323 Receptor kinase-like Gene Family AT4G11530 67.054 1.07e-122 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja4g0574 PK_Tyr_Ser-Thr 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0574 - - gmx:102662291 448.358