Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0565 ATGCAAGGTGCATTGGAATTACCACCTGGTTTCAGATTCCACCCCACTGACGATGAACTTGTCAAACACTACTTGTGTGCCAAGTGTGCTTCTCAACCCATCAATGTTCCCATTATCAAAGAACTCGACCTCTACAAGTTTGATCCATGGCAGCTTCCAGATATGGCTCTTTACGGTGAGAAGGAATGGTACTTTTTCACTCCCAGGGACCGGAAGTACCCCAACGGTTCACGGCCGAACCGGGCTGCTGGAACCGGGTACTGGAAGGCGACCGGAGCGGATAAGCCGATCGGAAAACCGAAGACTCTGGGGATCAAGAAGGCGCTGGTTTTCTATGCAGGGAAAGCACCTAAAGGTGTGAAGACTAATTGGATCATGCATGAGTATCGTCTTGCCAATGTTGATCGATCTGCCACCAAGAAAAACAACAACAATTTAAGGCTTGATGATTGGGTGTTGTGTCGAATTTACAACAAGAAAGGGAAGATTGAGAAATATGAGAGTGTGGTTGGGGTGATGGATCATTTTTCTGAGGAGAATCATGAGATGAAGCCTGAGATTAAGATGTATGGCCATGATGATTTCAGGAATGAGCACCAGCTGTATACGGATACATCAGATTCGGTTCCAAGGTTGCACACGGATTCCAGCTGCACGGAGGAGCACGTGCTGTCGCCGGAGGTCACGTGCAGCAAGGAGGTGCAGAGTGAGATCAAGTGGAATGAGCTTGACCCAGTTGCAGCCTCCTTTGATTTTGATATGAATTTAATAATGGATAACACCAACAATAACAACATGAACATGAACATGAACATGTCAGCAGTGGTGGATGACCCTTTTGCCCCTCAGGTTCAGTACCAGATGAACCAGCTCTCTTCACATTTTGATTCATATTCTTTTTGGAACACTTAG 912 0.4638 MQGALELPPGFRFHPTDDELVKHYLCAKCASQPINVPIIKELDLYKFDPWQLPDMALYGEKEWYFFTPRDRKYPNGSRPNRAAGTGYWKATGADKPIGKPKTLGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSATKKNNNNLRLDDWVLCRIYNKKGKIEKYESVVGVMDHFSEENHEMKPEIKMYGHDDFRNEHQLYTDTSDSVPRLHTDSSCTEEHVLSPEVTCSKEVQSEIKWNELDPVAASFDFDMNLIMDNTNNNNMNMNMNMSAVVDDPFAPQVQYQMNQLSSHFDSYSFWNT* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0565 303 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Lja4g0565 303 ProSiteProfiles NAC domain profile. 7 159 IPR003441 GO:0003677|GO:0006355
Lja4g0565 303 PANTHER NAC DOMAIN-CONTAINING PROTEIN 2-LIKE 5 256 - -
Lja4g0565 303 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Lja4g0565 303 Gene3D NAC domain 16 164 IPR036093 GO:0003677|GO:0006355
Lja4g0565 303 PANTHER NAC TRANSCRIPTION FACTOR 56 5 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0565 Lja-Chr4 4698919 4700588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0565 1 295 NAC Transcription Factor Family AT5G63790 58.249 1.71e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja4g0565 NAM 4.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0565 - - gmx:100170751 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0565 4 4698919 4700588 Lja4g0565 4 4698919 4700588 ECH
Lja1g4458 1 57978057 57979789 Lja4g0565 4 4698919 4700588 ECH