Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0562 ATGGGTGGTGGAGAAAATGTGTCAGCAATGCCAAAGGAAAAACTCCGTAATGAAAGCTCCTCAAGTGTTGAAACTGGGGATTTAGAATCTCACTCTCGCCTTAGCCTCGAGAAGGAAGTAGCCTTGGAAAGTTGCCGGGTATGCCAGTGTGCTGAATCTGATAAAAGAGGGGATGCTGCCCTAGAATTTCTGGGCATCATTCCAGTTTTAGAGAGCAAAGGGGAAGAAGTAGGGTCTGATGGCGTGGGGATTGCGAAAGATAACCGAAATGTTGAGAACGAATCTCGGGTGGTGGAATTTGTTAGCCCGGATGGCGAGGTTTTCGTTTGTAAGAGTGATTTGGAACTGGGGTTGTCTCATCAAGATACGTTAGTTGAGCTCGGTTGTTGTTGTAAAAATGATCTTGCGTTAGTACATTATGCGTGCGCGCTTAAGTGGTTTATTAACCATGGATCTACAATTTGTGAAATATGTGGACATATAGCGAGTAATATCAGAATATCTGACTTGAATAAGGTTGTTAGTTCTTTGAAGGAGTACGAGGCGTTGAGGGAAAGAACTGCTAGTGGAGGTCCTGGTCCTGCACAGGCTCATGGAAATACTGGTGTGGATCCTGATGCTGTGGCTGCTATCCGGAGGCAACGACTAAGTGAAATTGCACTGTGGTTTTGTCCTCACAATAGCAGCAATGTTAACAACTTTAGCAATGTGGATACAGTTTCACAGGTTGTTTCGGAGCATCCTTTGAATATTGTCATCGAAGATGCTGGCCCTGCACAGAATCCTGCTACTAAGTGGGCTGTAGAAGGCACCGGGATCCTGCTTGCTACGGGGCTGCTCACTATCACCCTTGCATGGCTTATAGCTCCTCGTGTTGGAAAGAAAACTGCAAGAGGTGGTCTTCATATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTGGTTTTCTTCCGCTTTTTTGTGCTCACCAGAATCAAGTATGGACCTGCACGATATTGGGCAATCTTGTTCATTTTCTGGTTTCTTGTCTTTGGAATATGGGCTTCTCGGACGCACAGTGCCCATACAACGTGA 1074 0.4572 MGGGENVSAMPKEKLRNESSSSVETGDLESHSRLSLEKEVALESCRVCQCAESDKRGDAALEFLGIIPVLESKGEEVGSDGVGIAKDNRNVENESRVVEFVSPDGEVFVCKSDLELGLSHQDTLVELGCCCKNDLALVHYACALKWFINHGSTICEICGHIASNIRISDLNKVVSSLKEYEALRERTASGGPGPAQAHGNTGVDPDAVAAIRRQRLSEIALWFCPHNSSNVNNFSNVDTVSQVVSEHPLNIVIEDAGPAQNPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTARGGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFIFWFLVFGIWASRTHSAHTT* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0562 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 161 IPR013083 -
Lja4g0562 357 PANTHER ZINC FINGER, RING-CH-TYPE 17 356 - -
Lja4g0562 357 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 17 356 - -
Lja4g0562 357 MobiDBLite consensus disorder prediction 1 31 - -
Lja4g0562 357 SUPERFAMILY RING/U-box 124 161 - -
Lja4g0562 357 SMART ringv_2 109 159 IPR011016 GO:0008270
Lja4g0562 357 MobiDBLite consensus disorder prediction 13 29 - -
Lja4g0562 357 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0562 33 347 C3H Transcription Factor Family AT5G08750 66.564 2.24e-145 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0562 - - gmx:100805323 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0562 4 4683190 4687695 Lja4g0562 4 4683190 4687695 ECH