Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0550 ATGTGTCAACTAAATTTCAGAAGGGGTCCTGTCAAAACATTGACAACATGGCTCATTTTCCTTTTTGTCTTCAAATTCAGTTATGCAGTCCAAGATCCTGATGTAGAAGGTGAAGCTTTGCTTGATGTTTTGAAAGACCTCAATGATTCCAATAATCGAATAACAGACTGGGACAAATTTTTAGTGAGCCCTTGCTTCAGTTGGTCTCATGTGAATTGTAAAAACGGACATGTCATATCTTTGTCCCTGGCTTCACTTGAATTTGCTGGAACACTTTCTCCCTCAATTGCCAAATTGAAATATTTGGTTAGCTTGGAATTGCAGAACAACCATCTTTCAGGCCCCTTACCTGATTCCATTTCCAACTTGACTTACCTACAATATCTAAATCTTGCTGGCAATAATTTTAATGGTTCTTTACCTGCTACATGGGGTCAACTAACCAGTCTAAAGAATTTGGATCTTTCATCTAATGCTCTTAGTGGAAGCGTCCCAGTACAACTCTTTTCAGTTCCAATGTTCAACTTTTCGAATACGGACCTTCATTGCGACTCTAACTTGGAGCAGCCTTGTGTTTCCAAATCTGAACATCCAGCTACAACAAACAGATCGAAGGTAGCCAAAGCTATACGTTTTGCAAGTTGCGGTGTATTTGCAATTCTGTTTCTCGGGGCTATCTTTTCATATAGATATCATAAAATGCAGAGGCGAAAAAATGAAGTCTTTGTTGATGTCTCAGGTGAAGATGAGAGCAAAATTTCATTTGGGCAATTGAGAAGATTTTCTTGGCGCGAACTCCAACTTGCAACTAGAAATTTCAGTGAAAGCAATGTAATTGGCCAGGGTGGCTTTGGAAAAGTGTACAAAGGAGTTCTCCCAGATAACACAAAAATTGCGGTGAAACGCCTCACTGATTATAATAATCCTGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCTTCTTATAAGTGTTGCGGTTCACAGAAACCTCCTAAGATTAATTGGATTCTGTACAACTTTAACTGAAAGAATCCTCGTATACCCTTTCATGGAAAATCTTAGTGTAGGATATAGACTGAGAGATTTGAAACCTGATGAGAAAGGCTTGGACTGGCCAACAAGGAAGCGTGTGGCTTTTGGTACAGCCCATGGTTTGGAGTATCTACATGAGCAATGCAATCCAAAGATAATACACCGCGACCTAAAGGCTGCGAATATTCTACTAGATGATGATTTTGAAGCTGTTCTAGGTGACTTTGGGCTAGCCAAGCTGGTTGATGCAAGGATGACTCATGTTACTACTCAAGTGAGGGGCACCATGGGTCATATTGCCCCTGAATATTTGTCAACTGGAAAATCATCTGAGAAGACAGATGTATTTGGATATGGCATCACACTTCTTGAACTAGTCACCGGTCAGCGCGCAATAGACCTCTCTCGGCTTGAAGAGGACGAGGATGTTCTTCTGATTGATCATGCCAAAAAGCTAATGAGACAAAGCAGGCTAGAAGACATTGTGGATAGAAATTTGGAGACTTATGATACCAAAGAAGTTGAGACTATTCTTCAGGTTGCTTTGCTTTGCACTCAAGGCTCTCCAGAGGATCGTCCGAGCATGTCGGAGGTGGTGAAGATGCTGCAGGGAGTAGGCTTGGCTGATAAATGGGCTGACTGGCAGCAACTTGAAGAGGCTAGGAATGAAGAATTATCACTCATGACTCACCAATTTGCTTGGAGTGATGAATCCACTCTTGATCAAGAAGCTATGCAGCTTTCCACAGCAAGATAG 1788 0.4155 MCQLNFRRGPVKTLTTWLIFLFVFKFSYAVQDPDVEGEALLDVLKDLNDSNNRITDWDKFLVSPCFSWSHVNCKNGHVISLSLASLEFAGTLSPSIAKLKYLVSLELQNNHLSGPLPDSISNLTYLQYLNLAGNNFNGSLPATWGQLTSLKNLDLSSNALSGSVPVQLFSVPMFNFSNTDLHCDSNLEQPCVSKSEHPATTNRSKVAKAIRFASCGVFAILFLGAIFSYRYHKMQRRKNEVFVDVSGEDESKISFGQLRRFSWRELQLATRNFSESNVIGQGGFGKVYKGVLPDNTKIAVKRLTDYNNPGGEAAFEREVLLISVAVHRNLLRLIGFCTTLTERILVYPFMENLSVGYRLRDLKPDEKGLDWPTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDARMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDLSRLEEDEDVLLIDHAKKLMRQSRLEDIVDRNLETYDTKEVETILQVALLCTQGSPEDRPSMSEVVKMLQGVGLADKWADWQQLEEARNEELSLMTHQFAWSDESTLDQEAMQLSTAR* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0550 595 PANTHER LRR RECEPTOR-LIKE KINASE 12 595 - -
Lja4g0550 595 SUPERFAMILY L domain-like 38 172 - -
Lja4g0550 595 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Lja4g0550 595 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Lja4g0550 595 SUPERFAMILY Protein kinase-like (PK-like) 251 547 IPR011009 -
Lja4g0550 595 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 595 - -
Lja4g0550 595 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Lja4g0550 595 Gene3D Ribonuclease Inhibitor 33 208 IPR032675 -
Lja4g0550 595 ProSiteProfiles Protein kinase domain profile. 273 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0550 595 SMART serkin_6 273 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0550 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672|GO:0006468
Lja4g0550 595 Gene3D Transferase(Phosphotransferase) domain 1 350 566 - -
Lja4g0550 595 Pfam Protein kinase domain 274 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0550 595 Gene3D Phosphorylase Kinase; domain 1 242 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0550 Lja-Chr4 4512983 4518487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0550 21 595 Receptor kinase-like Gene Family AT5G10290 54.801 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lja4g0550 Pkinase 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0550 - - gmx:100800886 999.579
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0550 4 4512983 4518487 Lja4g0550 4 4512983 4518487 ECH