Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0549 ATGGCTTCTCCTCCTTTGCCGGTAGCATACCAAGCATGGACAAGTCTTGCAGTGCCGGACTGGCTCAACAAAGGAGACAACGCATGGCAAATGATAGCAGCCACCCTCGTCGGCATTCAAAGCATGCCCGGTCTCGTCATCCTCTACGGAAGCATCGTGAAGAAGAAATGGGCCGTCAACTCCGCCTTCATGGCCCTCTACGCGTTCGCGGCTGTCATTATCTGCTGGGTCTCGTGGGCTTACAAGATGTCCTTCGGGGAGAAGCTCCTGCCCTTTTGGGGAAAGGCTGGCCCTGCTCTGGGCCAGCGCTTTCTCTTGAAGCAGGCTGCGCTGCCCGCTACCCCACATTACTACAATGACGGGCGACTGGAGACCGCTGAGATCGAGCCATTTTACCCGATGGCGACCATGGTGTGGTTCCAGTGTGTTTTTGCCGCCATTGCGCTTGTCATCCTGGCCGGATCTGTTCTGGCCAGGATGAGCTTCAAGGCGTGGATGATGTTTGTGCCACTGTGGCTGACTTTTTCTTACACCATTGGTGCGTTTAGTTTGTGGGGTGGCGGATTCTTGTTCCAATGGGGTGTTATGGATTACTCTGGTGGTTATGTCATTCACCTTTCTTCTGGAATTGCTGGCTTCACAGCTGCTTATTGGGTGGGCCCAAGATCGAAGAAGGACAGGGAGAGGTTCCCACCAAACAATGTGTTACTAACGTTGGCAGGGGCAGGGTTACTGTGGTTGGGATGGGCAGGTTTCAACGGAGGAGATCCATACTCAGCCAACACAGACTCTTCCATGGCGGTGCTCAACACCAATATTTGTGCTGCCACCAGCCTCCTCGTGTGGACATGTCTTGATGTTATTTTCTTCAAGAAACCTTCTGTTATTGGAGCCGTTCAGGGCATGATCACTGGTCTTGTATGCATCACTCCTGGCGCTGGTCTTGTTCAAGGGTGGGCTGCCATAGTTATGGGAGTGCTTTCAGGCAGTGTCCCATGGTACACCATGATGGTATTAGGCAAGAAGTTGAAAATATTCCAAATGGTCGATGACACCCTTGCCGTGTTCCACACACACGCCGTGGCGGGCATTCTTGGCGGCGTACTCACCGGCCTCTTCGCCGAGCCACGCCTAAGCACACTCTTCCTCCCCGTCACAAATTCCAAAGGAGGAGTCTACGGAGGCTCGGGTGGAGTCCAAATCCTGAAACAGATCGTGGGGGCTCTGTTCATCATTGGATGGAACATTGTGGCCACTTCAATCATCTGTTTTGTTATAAGTTTCATAGTTCCGTTGAGAATGACAGAAGAAGAGTTGTTGATTGGGGATGATGCGGTTCATGGGGAAGAAGCTTATGCATTGTGGGGTGATGGAGAGAAACTTAGCCTCTACAAAGATGATACCACCCACCATAATGTTGTGATGGCGTCAAGTGGTGCCACTCAAGATGTGTAG 1455 0.521 MASPPLPVAYQAWTSLAVPDWLNKGDNAWQMIAATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVSWAYKMSFGEKLLPFWGKAGPALGQRFLLKQAALPATPHYYNDGRLETAEIEPFYPMATMVWFQCVFAAIALVILAGSVLARMSFKAWMMFVPLWLTFSYTIGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYSANTDSSMAVLNTNICAATSLLVWTCLDVIFFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWYTMMVLGKKLKIFQMVDDTLAVFHTHAVAGILGGVLTGLFAEPRLSTLFLPVTNSKGGVYGGSGGVQILKQIVGALFIIGWNIVATSIICFVISFIVPLRMTEEELLIGDDAVHGEEAYALWGDGEKLSLYKDDTTHHNVVMASSGATQDV* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0549 484 Gene3D Ammonium transporter AmtB like domains 8 455 IPR029020 -
Lja4g0549 484 PANTHER AMMONIUM TRANSPORTER MEP2 14 466 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lja4g0549 484 Pfam Ammonium Transporter Family 28 452 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lja4g0549 484 SUPERFAMILY Ammonium transporter 21 434 - -
Lja4g0549 484 PANTHER AMMONIUM TRANSPORTER 14 466 - -
Lja4g0549 484 ProSitePatterns Ammonium transporters signature. 197 222 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lja4g0549 484 TIGRFAM amt: ammonium transporter 26 452 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0549 Lja-Chr4 4503988 4507814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0549 134 471 Inorganic Solute Cotransporters AT2G38290 69.822 3.03e-167 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0549 K03320 - gmx:100785993 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0549 4 4503988 4507814 Lja4g0549 4 4503988 4507814 ECH