Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0547 ATGGCAGAACCAGAAGACAACCTTCAATCCTCACCTATGGTTGAAACAGAGAACAACAAAAAGAAGAAGGAGAAGAAGAACAAGCACGACAAGAAAAGACCTCGAGATGTTGCTAACGAGGAGCACGCAGAAGAAGAAGAGGAGCAGATTGGGAATAACAGTGACAGGGATGGAGAATCGTCAAAGAAGAAGAAGAAGAAGAAGCATAAAGTGGAAGTGGAAGAGAGAAAGGAGAAGAACAATTCTGGGTCTGGAATTATGAGCACTGAATCCTTTGCTTCTCTGGAGTTGTCTGAACCTACTTCTAAGGCCATTGCAGACATGGGATTTCAGTTCATGACTCAGATTCAAGCTAGAGCAATTCCACCACTTCTTACTGGAAAAGATGTTCTTGGGGCTGCAAGGACCGGTTCTGGAAAAACTCTTGCATTTTTAATTCCTGCTGTGGAGCTTTTGTACAAGCTTAAGTTCACGCCTCGTGATGGAGCTGGTGTCGTTGTGATATGCCCAACTAGAGAGCTTGCAATGCAGACACATGCGGTGGCCATGGAGCTTCTCAAGTATCATTCACTAACTCATGGAATTGTTATGGGAGGTTCAGCTAGAAGAGCTGAAGCTGAAACCATCGCCAGAGGGGTAAACCTATTGATAGCAACTCCTGGTCGGCTTCTAGATCACCTTCAAAATACAAAGAGGTTCATACATAATAACTTGAAGTGCCTTATGATTGATGAAGCTGACAGGATATTAGAAGCAAACTTTGAGGATGAAATGAAGCAGATTATTAAGATCCTCCCAAAGAACAGGCAAACAGCTTTATTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCCCGTTTGTCCTTTCAGACCACTCCTATCTATATTGATGTAGATGATGGGAGAAACAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTCCCTGTGCCAAACGATTTACCGTTCTCTATTCCTTCTTGAAAAGGAATAAGTCGAAAAAAGTGATGGTCTTTTTATCTTCATGCAACTCTGTGAAATTCCATGCGGACCTTCTTAATCTCATTCATATGAATTGCTCAAGTATTCATGGAAAACAAAAGCAGCAGGCCCGGACAACTACATTTTTTGACTTCTGCAAAGCAGAAACAGGGATCTTGCTATGTACTGATGTTGCCGCTCGTGGACTTGACATACCTGCCGTGGACTGGATTGTGCAATATGACCCACCCGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCCTTGCTTTTCCTGATTCCTGAAGAGCTGCAATTTCTTCGCTACCTGAAGGAAGCTAAGGTCCCAGTGAAAGAATATGCATATGATGAAAAGAAGGTGGCAAATGTACAGTCTCACATGGAGAATTTGGTAGCCAACAATTATTATTTGAACAAGATGGCCAAAGAAGCTTATAGATCATACATATTAGCATACGATTCACATTCCATGAAGGATATATTCAACGTTCACAGTCTTGATTTGCAGGCCGTTGCTGCTTCATTCTGTTTTTCAAACCCACCAAAAGTGAGTCTGAACATTAACGGCAGTAAGAAAAGGAAGAAAATGCGTCAAGTTGATGGAAGTAAACATGGATTCGGCCACAACAATCCTTATGGAAGCAGGGGAAATGCTGACGATCAGCGGCAGTTTGTGAGGTATTAG 1731 0.4252 MAEPEDNLQSSPMVETENNKKKKEKKNKHDKKRPRDVANEEHAEEEEEQIGNNSDRDGESSKKKKKKKHKVEVEERKEKNNSGSGIMSTESFASLELSEPTSKAIADMGFQFMTQIQARAIPPLLTGKDVLGAARTGSGKTLAFLIPAVELLYKLKFTPRDGAGVVVICPTRELAMQTHAVAMELLKYHSLTHGIVMGGSARRAEAETIARGVNLLIATPGRLLDHLQNTKRFIHNNLKCLMIDEADRILEANFEDEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRNKVTNEGLQQGYVVVPCAKRFTVLYSFLKRNKSKKVMVFLSSCNSVKFHADLLNLIHMNCSSIHGKQKQQARTTTFFDFCKAETGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKEAKVPVKEYAYDEKKVANVQSHMENLVANNYYLNKMAKEAYRSYILAYDSHSMKDIFNVHSLDLQAVAASFCFSNPPKVSLNINGSKKRKKMRQVDGSKHGFGHNNPYGSRGNADDQRQFVRY* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0547 576 PANTHER RNA HELICASE 62 563 - -
Lja4g0547 576 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 480 IPR001650 -
Lja4g0547 576 Coils Coil 13 33 - -
Lja4g0547 576 Pfam DEAD/DEAH box helicase 114 285 IPR011545 GO:0003676|GO:0005524
Lja4g0547 576 CDD SF2_C_DEAD 311 441 - -
Lja4g0547 576 Pfam Helicase conserved C-terminal domain 324 430 IPR001650 -
Lja4g0547 576 Pfam Domain of unknown function (DUF4217) 472 532 IPR025313 -
Lja4g0547 576 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 90 118 IPR014014 GO:0003724
Lja4g0547 576 MobiDBLite consensus disorder prediction 1 87 - -
Lja4g0547 576 SMART DUF4217_3 471 534 IPR025313 -
Lja4g0547 576 MobiDBLite consensus disorder prediction 539 569 - -
Lja4g0547 576 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 242 250 IPR000629 -
Lja4g0547 576 SMART ultradead3 109 314 IPR014001 -
Lja4g0547 576 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 62 563 - -
Lja4g0547 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 453 IPR027417 -
Lja4g0547 576 Gene3D - 307 549 IPR027417 -
Lja4g0547 576 CDD DEADc_DDX18 101 298 IPR044773 GO:0003724|GO:0005524
Lja4g0547 576 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 296 IPR014001 -
Lja4g0547 576 Gene3D - 31 300 IPR027417 -
Lja4g0547 576 SMART helicmild6 350 431 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0547 Lja-Chr4 4489539 4494275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0547 90 449 Eukaryotic Initiation Factors Gene Family AT3G13920 30.471 1.23e-47 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0547 K13179 - gmx:100797375 921.383