Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0541 ATGCCTCTTTTGAGGAGAAAGGCTTTTGCCTTGGTTGAGCCTCCTGAGGATTTGAAGCTAGATGAGCAGGTTTACACAATTCGGTATACAAAAGAAATATTTCGAGATTATCCTGATTATTTGAAACGATTGAGTCTATACCGCCAGAGGGTTTGGACGTGTAATTTCACTGGAAAAACTGGCCTGACTTATGAAGAAGCTTTGGTGTCAGAACAACGAGCCAATGAGAAAGTCCAACAGATTCCTAAAGAATTCATGGCTTCTGCTTTAAGAATCATTCAGTACAGTATGCTCCCTTTGAAGGATCTTGCCGATTCAATTGCTGAAAAATTGAATGAACGTTTGTTTGTGGGTGCTGAAGTGTATGGGAAAAAGGATGATGGAGTATGTCCATGCAAAATATTAAAAGTCATCAAGAAAGGAGTTGACCAATTATGTTATGAGGTAGCTTGGCTCGACAAAAACAAGAATATAAGTGAAAAAGCCGAAATCAGTGCAGAAGATTTGGTGCAAAAGAAGCCGCTTTTTAGTAGAAATACGTTGAAGTCCTTTATTCGGGAATCTACATATCGCAACGCCCCTTGGGTTTTAAATGAAGAGCTGGCACTAAATCATGGAATCTCAACTGAAATTCCTCAGGAGTTGAAAGAAAGGGTTTTTTTCAAAGACGGACTTATTGTTTGCTCCAAGAAAAGGAAAAATGAGGATGAAACTGAAAACTCTAAAAGGAAGAAGTTGGATGGGAAACTAGTCAATGGTTCTGCCGAAGAGAAAGAACCAATCAAATATCCCATTGATGATCTATTGGTGAAGCGTAGTGCAGATGATCCTGTTTTCACCGATCGTCCCTCTCCAACAAGAGACTTCAGTGTTCCAATGTTTTGTGTAGGGGATCTCTTAATGGTTTGGGATTTTTGTGCTTCTTTTGGTAAACCTTTGAACCTGTGGCCCTACTCTCTAGAAGATTTTGAAAATGCAATCTGCCATAAAGATAGCAATGTGGTCCTCCTTGTGGAATCTCACGCGGCACTTTTTCGTGTTCTGATCAAAGAGGATGGTGAATACTCTTCTATTGTTAAGAAACGGAAGATTACACTGATTAATTGGACAGAATATTTATGTGATTTTCTACAAATGATCAATATTCCTGCTCTCCGGCAACATGAAGGAACCATAAAGCGGGGACATTATGGCCTGTTAGATGCCAATGTTAAATTAGGAATCTTATCTGAATTGGTCAATCAAGTACTAGAAACTGGAGCTTTCAGGGAAACGATGGATGAGTTAATGGAACAGCGGCAGGCACTTGGGGCCTCTAGAAGGGAAGAAGCACTGGAGGAGGGTAGGAGGAGAAGAGAAGAAAAGGAGCGGTTGAAAGCTGAGTTAGAAAGCAATGGAATTATGAATGGGCATCATCCAAACAGTGCAAATGGAGATGTGGGAAAGAAAAGTAATGGAGAGATACAAAATGGAGACGTGGGAAAGAAAAGTAATGGAAAGATAGAATCCTCCAGGCAAAACAATCCATTGGGCGCGAGTGGGACCAAGCATTCAAATTCTGCTTCTAAAAAAATTCCTACGAAGTTGAATTCTGAGCTGAAAGAACCAGTAGAAAATGGAAAAGATATATTGAAACAGTCAAAGGGTGACAAGGATCCATCAGAGAAAAATAGTAAACAGAAGAAAGAATATTTTCAAAAGGAGATGGAGAAACGATTGATTCGTAGAAGCCCATTAGGTCAGGACAGAGAGCGCAATAGGTATTGGTGGTTTCATCGTGATTGGAGGATATTCGTTGAAAACAAAGACTCCACGGTGTGGGGATACTACAGCAGCAAGGAAGAGCTTGATGCGTTGATGGGTTCACTGAATTGCAAGGGTGTGCGAGAGAGAGCACTGCAGAAACAACTGGAAAAGTATTATAGTAGTATATGCTCAGAACTCCGGAAAAGATCGAAGGATTTGATGTCCAATACTGCAAGTGATGAATCCGTGCTTCGAAGGTCTACTCGTGTTCGAGCTCCACCTCGGCAAAATCCTGCCAATGCTTTCCTCAGATATGCTAACAAGTGGAAAGAAGAGTGA 2085 0.4082 MPLLRRKAFALVEPPEDLKLDEQVYTIRYTKEIFRDYPDYLKRLSLYRQRVWTCNFTGKTGLTYEEALVSEQRANEKVQQIPKEFMASALRIIQYSMLPLKDLADSIAEKLNERLFVGAEVYGKKDDGVCPCKILKVIKKGVDQLCYEVAWLDKNKNISEKAEISAEDLVQKKPLFSRNTLKSFIRESTYRNAPWVLNEELALNHGISTEIPQELKERVFFKDGLIVCSKKRKNEDETENSKRKKLDGKLVNGSAEEKEPIKYPIDDLLVKRSADDPVFTDRPSPTRDFSVPMFCVGDLLMVWDFCASFGKPLNLWPYSLEDFENAICHKDSNVVLLVESHAALFRVLIKEDGEYSSIVKKRKITLINWTEYLCDFLQMINIPALRQHEGTIKRGHYGLLDANVKLGILSELVNQVLETGAFRETMDELMEQRQALGASRREEALEEGRRRREEKERLKAELESNGIMNGHHPNSANGDVGKKSNGEIQNGDVGKKSNGKIESSRQNNPLGASGTKHSNSASKKIPTKLNSELKEPVENGKDILKQSKGDKDPSEKNSKQKKEYFQKEMEKRLIRRSPLGQDRERNRYWWFHRDWRIFVENKDSTVWGYYSSKEELDALMGSLNCKGVRERALQKQLEKYYSSICSELRKRSKDLMSNTASDESVLRRSTRVRAPPRQNPANAFLRYANKWKEE* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0541 694 MobiDBLite consensus disorder prediction 468 527 - -
Lja4g0541 694 Pfam ATP-utilising chromatin assembly and remodelling N-terminal 23 121 IPR013136 -
Lja4g0541 694 Coils Coil 441 465 - -
Lja4g0541 694 MobiDBLite consensus disorder prediction 434 462 - -
Lja4g0541 694 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 574 640 IPR028941 -
Lja4g0541 694 ProSiteProfiles WAC domain profile. 22 127 IPR013136 -
Lja4g0541 694 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN, 2A 1 692 - -
Lja4g0541 694 MobiDBLite consensus disorder prediction 434 566 - -
Lja4g0541 694 MobiDBLite consensus disorder prediction 528 566 - -
Lja4g0541 694 Coils Coil 688 694 - -
Lja4g0541 694 Pfam DDT domain 295 351 IPR018501 -
Lja4g0541 694 SMART testlast3 293 354 IPR018501 -
Lja4g0541 694 ProSiteProfiles DDT domain profile. 293 354 IPR018501 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0541 545 650 Homeobox Transcription Factor Family AT5G44180 38.261 7.06e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Lja4g0541 WAC_Acf1_DNA_bd 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0541 - - gmx:100789956 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0541 4 4435933 4442362 Lja4g0541 4 4435933 4442362 ECH