Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0540 ATGGCTTCTTCTCTGATTCGTAGGACCATCACCACCAACATCAAAAAGCTCCCATTGTTATCTTCTCCGAGCTGCAATAACAACTGGGTATCTCACCATTCCTCCATCCACAAAGCTATGGCCGTTTCCTTTCATTCCGAAGCTGTTGCTGGTGGTGGCGCAGGGCTACCATCGTACATGCGTGGAGCTGTGTTTTGGGAACCCAACAAGCCTCTCACCATCGAAGAATTCCACATGCCTCGTCCCAAGGCTGGTGAAGTTCTCATCAAAACCAAGGCATGTGGAGTATGCCACTCTGATCTACATGTCATGAAAGGTGAAATTCCGTTTGCTAGTCCTTGTGTTGTGGGGCATGAGATTACTGGTGAAGTCGTTGAACATGGGGCTCTCTCTGATGGAACAATCATAGCAAGGCTGCCAGTTGGATCTCGAGTTATTGGAGCCTTCATCATGCCTTGTGGCAATTGCTCCTACTGTTCTAAGGGCCATGATGATCTATGTGAAGCTTTCTTTGCTCATAATCGGGCACATGGTACCCTCTACGATGGTGAAACACGGCTCTTTCTTCGGAGCAGTGGAAAGCCAATATTCATGTATAGTATGGGAGGTCTTGCTGAATACTGTGTTGTGCCAGCAAATGCATTGGCTGTATTACCACACTCAATGCCATATATCGAGTCTTCAGTTCTAGGATGTGCTGTTTTTACTGCTTATGGTGCTATGGCTCATGGGGCTAACGTGCGTCCGGGTGATTCCGTTGCTGTTATTGGAACTGGGGGTGTTGGTTCTAGTTGCTTGCAGATAGCTAGAGCATTTGGCGCTTCAGATATAATTGCTGTGGATATTCAGGATGAAAAGCTACAGAAAGCAAAGACGTTGGGTGCTACTCACACTATAAATTCAGCAAAGGAAGATCCCATTCAAAAGATAATTGAAATTACTGGTGGAAAGGGTGTTGACGTTGCTGTGGAAGCCTTGGGGAGATCACAGACATTTTCTCAGTGTGTACAGAGTGTGAAAGATGGAGGAAAAGCTGTGATGATTGGACTGGCACAAGCTGGTACCCTTGGAGAGGTGGATATAAATCGGCTTGTTCGTAGAAAGATACAAGTTATTGGCTCCTATGGAGGCAGGGCGAGGCAAGATCTTCCTAAGTTGATTAGATTGGCAGAAACAGGTATCTTCAATCTTGACAATGCTGTTTCCAGAAGATACTCTTTTGAGGATGCAGGCAAAGCATTCCAAGATCTCAACGAAGGGAAAATTGTCGGCCGAGCTGTGATTGAGATATAG 1293 0.4602 MASSLIRRTITTNIKKLPLLSSPSCNNNWVSHHSSIHKAMAVSFHSEAVAGGGAGLPSYMRGAVFWEPNKPLTIEEFHMPRPKAGEVLIKTKACGVCHSDLHVMKGEIPFASPCVVGHEITGEVVEHGALSDGTIIARLPVGSRVIGAFIMPCGNCSYCSKGHDDLCEAFFAHNRAHGTLYDGETRLFLRSSGKPIFMYSMGGLAEYCVVPANALAVLPHSMPYIESSVLGCAVFTAYGAMAHGANVRPGDSVAVIGTGGVGSSCLQIARAFGASDIIAVDIQDEKLQKAKTLGATHTINSAKEDPIQKIIEITGGKGVDVAVEALGRSQTFSQCVQSVKDGGKAVMIGLAQAGTLGEVDINRLVRRKIQVIGSYGGRARQDLPKLIRLAETGIFNLDNAVSRRYSFEDAGKAFQDLNEGKIVGRAVIEI* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0540 430 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 60 429 - -
Lja4g0540 430 CDD Zn_ADH10 60 429 - -
Lja4g0540 430 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 222 395 IPR036291 -
Lja4g0540 430 Pfam Alcohol dehydrogenase GroES-like domain 85 215 IPR013154 -
Lja4g0540 430 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 117 131 IPR002328 GO:0008270|GO:0016491
Lja4g0540 430 SUPERFAMILY GroES-like 55 263 IPR011032 -
Lja4g0540 430 SMART PKS_ER_names_mod 67 428 IPR020843 GO:0016491
Lja4g0540 430 Gene3D - 237 374 - -
Lja4g0540 430 PANTHER NAD-DEPENDENT ALCOHOL DEHYDROGENASE 60 429 - -
Lja4g0540 430 Pfam Zinc-binding dehydrogenase 260 391 IPR013149 -
Lja4g0540 430 Gene3D - 64 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0540 Lja-Chr4 4427688 4432682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0540 74 352 Monolignol Biosynthesis Gene Families AT4G37970 27.113 5.03e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0540 - - aprc:113855348 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0540 4 4427688 4432682 Lja4g0540 4 4427688 4432682 ECH