Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0537 ATGGATAAGTATGAGACCGTGAAGGATTTGGGAGCTGGGAATTTTGGGGTGGCCAGGCTCATGAGGAACAAGGAGACTAAGGAGCTTGTTGCCATGAAATACATCGAGCGTGGCCTTAAGATTGATGAGAATGTGGCTAGAGAGATTATCAACCACAGGTCCCTTCGGCACCCCAATATAATTCGCTTCAAGGAGGTGGTTTTGACCCCCACACATTTGGCAATAGTAATGGAGTATGCAGCTGGAGGAGAACTCTTTGAGAGGATATGCAATGCTGGCAGGTTCAGTGAAGATGAGGCTAGATATTTCTTTCAGCAGCTGATATCAGGTGTCCATTACTGTCATGCCCTGCAAATATGCCACCGAGATTTGAAGCTAGAAAATACCCTTTTAGATGGAAGCCCTGCACCCCGCTTGAAAATTTGTGACTTTGGTTACTCCAAGTCATCTTTGCTTCATTCACGACCCAAATCAACTGTTGGAACTCCAGCGTATATAGCACCAGAGGTGCTTTCTAGGAGGGAGTATGATGGGAAGCTGGCTGATGTGTGGTCATGTGGAGTGACTCTTTATGTCATGCTGGTTGGAGCATATCCCTTTGAGGATCATGATGACCCTCGGAATTTTAGGAAAACTATTCAGCGTATAATGGCTGTTCAATACAAAATCCCTGATTATGTTCACATATCTCAAGATTGCAGACACCTCCTTTCTCGTATATTTGTAGCAAATCCGTTAAGGAGAATCTCTCTTAAGGAAATCAAGAACCACCCATGGTTTTTAAAGAATCTTCCAAGGGAGCTAACTGAATCAGCTCAGGCTGTCTATTACCAGCGAGGAGGCAACCTGAGCTTTTCTGTTCAAAGCGTGGAAGAGATAATGAAGATTGTGGGAGAGGCAAGAGAACCGCCTCCAGTATCTAGGCCTGTCAAAGGTTTTGGGTGGGAAGGTGAAGAAGAAGATGAAGAAGATGTGGAAGAAGAGGTTGAGGAAGAGGAGGACGAAGAAGATGAGTATGACAAGAGGGTGAAAGAGGTTCATGCAAGTGGAGAATTTCAAATCAGTTAA 1068 0.4466 MDKYETVKDLGAGNFGVARLMRNKETKELVAMKYIERGLKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVHYCHALQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDHDDPRNFRKTIQRIMAVQYKIPDYVHISQDCRHLLSRIFVANPLRRISLKEIKNHPWFLKNLPRELTESAQAVYYQRGGNLSFSVQSVEEIMKIVGEAREPPPVSRPVKGFGWEGEEEDEEDVEEEVEEEEDEEDEYDKRVKEVHASGEFQIS* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0537 355 SUPERFAMILY Protein kinase-like (PK-like) 2 291 IPR011009 -
Lja4g0537 355 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0537 355 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0537 355 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Lja4g0537 355 MobiDBLite consensus disorder prediction 316 339 - -
Lja4g0537 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Lja4g0537 355 Coils Coil 315 349 - -
Lja4g0537 355 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Lja4g0537 355 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lja4g0537 355 PANTHER SERINE/THREONINE-PROTEIN KINASE SRK2H 2 348 - -
Lja4g0537 355 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0537 355 CDD STKc_SnRK2 3 259 - -
Lja4g0537 355 PANTHER SERINE/THREONINE KINASE 2 348 - -
Lja4g0537 355 MobiDBLite consensus disorder prediction 303 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0537 Lja-Chr4 4395005 4399640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0537 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 42.593 2.13e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Lja4g0537 Pkinase 6.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0537 K14498 - gmx:547968 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0537 4 4395005 4399640 Lja4g0537 4 4395005 4399640 ECH