Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0535 ATGGAGAAGAAAACACTCTGCTTTTTCTTCTTACTCCTCTTTGTCTTAGCTTCTGATGTGGCGGTGAAGACGGCGGAGGCGAGGGTGTGTGAGACAAAGAGCCACACATTCCACCATTCATGCGTGAGTGGACACAACTGTGCACAAGTTTGCAAAACCGAAGGCTTCACCGGTGGAAAATGCAGAGGATTCCGCCGCCGCTGTTTCTGCACCAAAAGATGTTGA 225 0.4978 MEKKTLCFFFLLLFVLASDVAVKTAEARVCETKSHTFHHSCVSGHNCAQVCKTEGFTGGKCRGFRRRCFCTKRC* 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0535 74 CDD Knot1 40 71 IPR003614 GO:0006952
Lja4g0535 74 PANTHER DEFENSIN MTDEF4.7 1 74 - -
Lja4g0535 74 Gene3D - 28 74 IPR036574 -
Lja4g0535 74 Pfam Gamma-thionin family 28 74 - -
Lja4g0535 74 PRINTS Purothionin signature 59 73 IPR008176 GO:0006952
Lja4g0535 74 PRINTS Purothionin signature 29 44 IPR008176 GO:0006952
Lja4g0535 74 SMART gth_4 29 74 IPR003614 GO:0006952
Lja4g0535 74 SUPERFAMILY Scorpion toxin-like 28 74 IPR036574 -
Lja4g0535 74 PANTHER DEFENSIN-LIKE PROTEIN 1 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0535 Lja-Chr4 4381214 4381908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0535 11 74 Plant Defensins Gene Families AT2G02130 62.121 1.56e-23 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0535 - - twl:120001209 63.1586