Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0533 ATGGGCAGATCTCCATGCTGTGACAAAGAGCACATAAACAAAGGTACTTGGTCCAGAGAAGAAGATCTCTGCCTCTCCAACTACATCAAGGCAAACGGGGAAGGCAACTGGAGAGCTCTCCCAAAAGCCGCAGGATTGAACCGATGCGGCAAGAGCTGCAGGCTCAGGTGGATTAATTACCTAAAACCCGGCGTCAAGCATGGAAACTTCACTGCTGAGGAAGATGATCTCATCATCCAACTTCACAGTGAGGTTGGAAACAAGTGGGCTTCGATTGCGGCCTATCTACCTGGGAGAACTGATAATGAGATCAAGAACCACTGGAACACCCGCATCAAGCGCCAGCTCTACCTCCGCGGAATCAACCCCGCAACCCATGAGCGAATCCCCGGCTTGGGCCAACTCCCCTCTTTATCCACAGCCTCTGTCGCCATTGTCACCGCTGCCACCTCAGCACCTCCTGCACCTGTGGTGGGCCTCACAAGCAAGAAGGTAATCATCAGCGCCAACAACCACAGCAGCAGCAGCAACAGCATCGTCACTAGCGGCGGCAGCATCAGCAACCCCCAGAAGAACAAAGACAAGAAGAAGATTGAGGATCAGTTTCAGATGTTTGATGTTTTTTCCAATTCCAAGGTTGTTGGAAAGGCTGCTGACTCAGGCTCGAATAGAAGCAGTGCGGTCTCTGCATATCAGGAAGCTTATAATCCTGAAATCAACTTGGAACTTTCATTGGCACCACCAATGAACCCTCCTCCTCCTCAGAATCAGAATGTGATGCCACCACCACAACAGGTTTTAGGGTTCCAAAGGGGTGCTGCTCCTGGTGGATTTATGAGATTTTATGGGCTGTGA 855 0.5088 MGRSPCCDKEHINKGTWSREEDLCLSNYIKANGEGNWRALPKAAGLNRCGKSCRLRWINYLKPGVKHGNFTAEEDDLIIQLHSEVGNKWASIAAYLPGRTDNEIKNHWNTRIKRQLYLRGINPATHERIPGLGQLPSLSTASVAIVTAATSAPPAPVVGLTSKKVIISANNHSSSSNSIVTSGGSISNPQKNKDKKKIEDQFQMFDVFSNSKVVGKAADSGSNRSSAVSAYQEAYNPEINLELSLAPPMNPPPPQNQNVMPPPQQVLGFQRGAAPGGFMRFYGL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0533 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja4g0533 284 CDD SANT 69 110 IPR001005 -
Lja4g0533 284 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Lja4g0533 284 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja4g0533 284 CDD SANT 16 61 IPR001005 -
Lja4g0533 284 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 252 - -
Lja4g0533 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja4g0533 284 Gene3D - 14 66 - -
Lja4g0533 284 Gene3D - 69 115 - -
Lja4g0533 284 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Lja4g0533 284 MobiDBLite consensus disorder prediction 173 193 - -
Lja4g0533 284 SMART sant 66 114 IPR001005 -
Lja4g0533 284 SMART sant 13 63 IPR001005 -
Lja4g0533 284 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja4g0533 284 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja4g0533 284 PANTHER TRANSCRIPTION FACTOR MYB7 1 252 - -
Lja4g0533 284 MobiDBLite consensus disorder prediction 173 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0533 Lja-Chr4 4367779 4369178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0533 1 147 MYB Transcription Factor Family AT2G16720 63.158 4.74e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g0533 Myb_DNA-binding 5.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0533 K09422 - gmx:100808083 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0533 4 4367779 4369178 Lja4g0533 4 4367779 4369178 ECH
Lja4g0533 4 4367779 4369178 Lja1g4405 1 57158857 57160721 PCT