Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0529 ATGGCGAAATCAACTTCAAGCACGGTAACACTGAAGCCTCTCTGGGTCCTACCATACCGAACCCAGAACATCAGAGAAGTCTACACGATAGGCAGAAAGCTCGGTCAAGGTCAATTCGGGACAACCTTCCTCTGCACACACAAGGTTACAGGTTTAACCTTCGCCTGCAAGACTATTCCCAAGCGGAAGCTTCTCTGCAAGGAGGACTACGACGATGTTTGGAGGGAGATTCAGATAATGCACCATTTATCCGAGCATGCCCATGTGGTGAGAATCGAGGGTGCGTTTGAGGATTCCATGGCTGTGCATCTGGTCATGGAGGTTTGTGAAGGGGGTGAGCTTTTTGATAGGATTGTGCAGAAGGGTCATTATAGTGAGAGACAAGCTGCGACCTTGATAAAGACTATTGTTGAGGTGGTTGAGGCTTGTCACTCTCTTGGGGTTATGCATAGGGACCTCAAGCCTGAGAATTTTCTGTTTGATACGCTTGATGAGCATGCTAAGCTTAAAGCTACTGATTTTGGGTTGTCTGTTTTTTACAAGCCTGGTGAAACCTTTTCTGATGTTGTTGGGAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCTCTATGGACCTGAATCAGATGTGTGGAGTGCCGGGGTCATTCTGTACATCTTATTAAGTGGGGTGCCACCATTTTGGGCAGAATCTGAACAGGGGATCTTCCGGCAGATTTTACTTGGAAAACTTGATTTTCAGTCTGAGCCTTGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGGAAAATGCTTGATCAAAACCCAAAAACAAGGCTTACAGCACATGAAGTACTCCGCCACCCGTGGATTGTTGATGACAACCTTGCACCTGATAGACCTCTTGATTCTGCGGTCTTATCACGTCTAAAACAATTCTCAGCAATGAATAAACTGAAAAAGATGGCGTTGCGTGTTATTGCTGAGAGGCTATCTGAGGAAGAAATTGGTGGCCTGAAAGAATTATTCAATATGATTGACACAGACAACAGTGGAACCATAACATTTGATGAGTTAAAAGATGGCTTAAAGCGAGTAGGATCTGAACTCATGGAGTCTGAAATCAAGGATCTTATGGATGCTGCGGATATTGATAACAGCGGGACAATTGACTATGGTGAATTCATTGCTGCCACTGTTCATCTAAATAAGCTGGAGAGAGAGGAAAACCTGGTGTCAGCCTTCTCCTATTTTGACAAAGATGGTAGCGGTTACATAACCCTAGAAGAGATTCAACAAGCTTGTAAGGACTTTGGTTTAGATGATATCCATATTGATGAAATGATCAAGGAAATCGATCAAGATGATGATGGACAAATAGATTATGGAGAGTTTGCTGCCATGATGAGAAAGGGCAATGGAGGGATAGGAAGGAGAACTATGAGAAACACACTTAATTTAAGAAATGCTCTGGAATTAGTGGGCAATGTGCCCAATCAAGTTATTGATGGTTTCCTTAAGTAA 1509 0.438 MAKSTSSTVTLKPLWVLPYRTQNIREVYTIGRKLGQGQFGTTFLCTHKVTGLTFACKTIPKRKLLCKEDYDDVWREIQIMHHLSEHAHVVRIEGAFEDSMAVHLVMEVCEGGELFDRIVQKGHYSERQAATLIKTIVEVVEACHSLGVMHRDLKPENFLFDTLDEHAKLKATDFGLSVFYKPGETFSDVVGSPYYVAPEVLRKLYGPESDVWSAGVILYILLSGVPPFWAESEQGIFRQILLGKLDFQSEPWPSISDSAKDLIRKMLDQNPKTRLTAHEVLRHPWIVDDNLAPDRPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFNMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDNSGTIDYGEFIAATVHLNKLEREENLVSAFSYFDKDGSGYITLEEIQQACKDFGLDDIHIDEMIKEIDQDDDGQIDYGEFAAMMRKGNGGIGRRTMRNTLNLRNALELVGNVPNQVIDGFLK* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0529 502 SUPERFAMILY EF-hand 325 466 IPR011992 -
Lja4g0529 502 Gene3D - 399 502 - -
Lja4g0529 502 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Lja4g0529 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Lja4g0529 502 CDD STKc_CAMK 27 285 - -
Lja4g0529 502 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Lja4g0529 502 ProSitePatterns EF-hand calcium-binding domain. 342 354 IPR018247 -
Lja4g0529 502 ProSiteProfiles EF-hand calcium-binding domain profile. 439 470 IPR002048 GO:0005509
Lja4g0529 502 Gene3D Phosphorylase Kinase; domain 1 30 114 - -
Lja4g0529 502 Gene3D Transferase(Phosphotransferase) domain 1 115 326 - -
Lja4g0529 502 SUPERFAMILY Protein kinase-like (PK-like) 9 309 IPR011009 -
Lja4g0529 502 SMART efh_1 333 361 IPR002048 GO:0005509
Lja4g0529 502 SMART efh_1 439 467 IPR002048 GO:0005509
Lja4g0529 502 SMART efh_1 369 397 IPR002048 GO:0005509
Lja4g0529 502 SMART efh_1 405 433 IPR002048 GO:0005509
Lja4g0529 502 Pfam EF-hand domain pair 404 465 IPR002048 GO:0005509
Lja4g0529 502 Pfam EF-hand domain pair 334 394 IPR002048 GO:0005509
Lja4g0529 502 CDD EFh 406 446 IPR002048 GO:0005509
Lja4g0529 502 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0529 502 Gene3D - 327 398 - -
Lja4g0529 502 ProSiteProfiles EF-hand calcium-binding domain profile. 329 364 IPR002048 GO:0005509
Lja4g0529 502 CDD EFh 334 393 IPR002048 GO:0005509
Lja4g0529 502 ProSiteProfiles EF-hand calcium-binding domain profile. 401 436 IPR002048 GO:0005509
Lja4g0529 502 ProSitePatterns EF-hand calcium-binding domain. 448 460 IPR018247 -
Lja4g0529 502 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0529 502 PANTHER SERINE/THREONINE-PROTEIN KINASE 15 478 - -
Lja4g0529 502 Pfam Protein kinase domain 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0529 502 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Lja4g0529 502 ProSitePatterns EF-hand calcium-binding domain. 414 426 IPR018247 -
Lja4g0529 502 PANTHER BNAA09G05220D PROTEIN 15 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0529 Lja-Chr4 4335041 4339339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0529 16 485 EF-hand Containing Proteins AT4G09570 77.495 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja4g0529 Pkinase 2.1e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0529 K13412 - gmx:100806678 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0529 4 4335041 4339339 Lja4g0529 4 4335041 4339339 ECH