Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0517 ATGGAGTTGCTTCCTCAACCAATGATTTCCCCTCTAATCCTTCTTGTAATTTGCTACTTTTACCTTGGAACAGCCATAGATTGTGGTGGAAACAACATTGCAAAAACCATTACCATTGATAAATTTGGCAGAGGAGGAGCATTTAGAAGTATTCAAGCTGGTATTGATTCTATACAGAGTAACAACGACCAGTGGGTTAAGATTCACATAAATGCTGGCGTGTACATTGAAAAAGTTTCAATTCCGTATGATAAACCATGCATCATCTTAGAAGGAGAAGGCAGTCGCCATACTGTCATTATTCATGGTGATACCCGAACAGCTACTAGCTGGGAAGCAACATTCACTTCAAGTCCACCTAATGTGATTGTGAGTGGCATTGCCTTTAAGAACACATTTAATTTGGTGGGGGGTCAATTACCGGGTGTAACAGCGAAAATCGAAGTAGCAGTGGCGGCTGTTGTAGCTGGAGACAAATCCTCCTTCTTTAATTGTGCTTTCCAGGGTTATCAAGACACTCTGATCGCTGCGATCGGACGCCATTACTTTAAAGATTGCTACATTCAAGGTGAGGTGGATTTCATTGCTGGTGCCGGGCAATCTTATTTTGAGAATTGCACAATCAGTGTCACACAAGCAAAGGGTAGACCTCCTGGTTTTATCACAGCTCAAAGCAGGGCTTCATCAAATGACCCAGATGGTTTTGTTTTTGAGGGAGGTTCTGTTGATGGGATTGGTGTAGTGAATCTAGGAAGAGCATGGGGCCCTTACTCAAGAGTTATATTTCATAAAACATACTTTTCTTCAGTGGTGATTCCAGAAGGATGGAACTCTTGGAACTTTTATGGTCAAGAGGGTAAGATCACCTATGCAGAAGTTGACTGCATAGGACCTGGGGCTAATAATGTCAACCGTGTCCCATGGAAGAAGAATATGACTCCTTCACAACTACAAGAATTTTCCAAATCATCTTTCATTAATAAAGATGGATGGCTTGACAACATTCCAATTAAGTACTAG 1020 0.4147 MELLPQPMISPLILLVICYFYLGTAIDCGGNNIAKTITIDKFGRGGAFRSIQAGIDSIQSNNDQWVKIHINAGVYIEKVSIPYDKPCIILEGEGSRHTVIIHGDTRTATSWEATFTSSPPNVIVSGIAFKNTFNLVGGQLPGVTAKIEVAVAAVVAGDKSSFFNCAFQGYQDTLIAAIGRHYFKDCYIQGEVDFIAGAGQSYFENCTISVTQAKGRPPGFITAQSRASSNDPDGFVFEGGSVDGIGVVNLGRAWGPYSRVIFHKTYFSSVVIPEGWNSWNFYGQEGKITYAEVDCIGPGANNVNRVPWKKNMTPSQLQEFSKSSFINKDGWLDNIPIKY* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0517 339 SUPERFAMILY Pectin lyase-like 33 337 IPR011050 -
Lja4g0517 339 PANTHER PECTINESTERASE 1 337 - -
Lja4g0517 339 Gene3D - 30 339 IPR012334 -
Lja4g0517 339 Pfam Pectinesterase 46 328 IPR000070 GO:0030599|GO:0042545
Lja4g0517 339 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0517 Lja-Chr4 4251697 4254897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0517 14 285 Carbohydrate Esterase AT2G19150 43.116 1.68e-66 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0517 - - var:108336510 389.808