Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0503 ATGTCAGCCGTGGTCTCTGCCCTTGTTCAAGTCATTGGTGGTGGTGGGACTGATTCACTGCATAATCAACCTCCAATAATAACACCATCGGAGGAGCTCACTAGTGATTCAGCAAAAGAACAATCCCAACCACGGCAAGATCAAGGAAACATTATAAGAAGAAAGTATAGAGGAGTTCGGCAGCGGCCATGGGGGAGGTGGGCGGCGGAGATTCGAGATCCAAAGAAGGCAGCTCGGGTTTGGCTTGGAACTTTTGACACCGCTGAGGCTGCTGCACTTGCTTATGATAAAACTGCTCTTTCTTTCAAAGGAAGCAAAGCTAAGCTTAATTTCCCAGAAAGAGTAGTTGAAGTTCAATGCATACAAGGACCAACACAAGGAGAAGAAGGAAAAGCAAAACTTGGTTACCTCACAAATCGTCCACAACTGATCCATCAACCACAACCACGTGCTCCTATTGCTCTTCCTTCTCAATCTGATCCAGTACTTCATGGCAACAATTTCTTAGTACCTCGTTTTTATGGGAGTGATCACGTGTTTGTTTCTTCTCGTCCTTCATCGGGTGCTTCTTCGTCTTCACCGTCATCTTCCGGAAACTCTCGTTCTCAACAAGAAAAAGAGCTTCTAACGTTTTCGATGCAATCTGGTGGTTCTTCTTCCACTTCTGATCCTCCTAAGTGA 681 0.4552 MSAVVSALVQVIGGGGTDSLHNQPPIITPSEELTSDSAKEQSQPRQDQGNIIRRKYRGVRQRPWGRWAAEIRDPKKAARVWLGTFDTAEAAALAYDKTALSFKGSKAKLNFPERVVEVQCIQGPTQGEEGKAKLGYLTNRPQLIHQPQPRAPIALPSQSDPVLHGNNFLVPRFYGSDHVFVSSRPSSGASSSSPSSSGNSRSQQEKELLTFSMQSGGSSSTSDPPK* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0503 226 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Lja4g0503 226 Gene3D AP2/ERF domain 54 114 IPR036955 GO:0003700|GO:0006355
Lja4g0503 226 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Lja4g0503 226 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Lja4g0503 226 MobiDBLite consensus disorder prediction 16 54 - -
Lja4g0503 226 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Lja4g0503 226 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Lja4g0503 226 MobiDBLite consensus disorder prediction 181 226 - -
Lja4g0503 226 SUPERFAMILY DNA-binding domain 55 113 IPR016177 GO:0003677
Lja4g0503 226 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Lja4g0503 226 PANTHER DNA-BINDING DOMAIN 1 225 IPR044808 GO:0003700|GO:0009873
Lja4g0503 226 MobiDBLite consensus disorder prediction 21 49 - -
Lja4g0503 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF115-LIKE 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0503 Lja-Chr4 4110477 4111860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0503 1 115 AP2-EREBP Transcription Factor Family AT5G61890 64.103 8.79e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g0503 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0503 - - lja:Lj4g3v2871880.1 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4372 1 56506757 56508198 Lja4g0503 4 4110477 4111860 ECH
Lja4g0503 4 4110477 4111860 Lja4g0503 4 4110477 4111860 ECH
Lja1g1677 1 18513130 18515367 Lja4g0503 4 4110477 4111860 ECH
Lja4g0503 4 4110477 4111860 Lja1g4372 1 56506757 56508198 ECH
Lja4g0503 4 4110477 4111860 Lja1g1677 1 18513130 18515367 ECH
Lja4g0503 4 4110477 4111860 Lja1g4372 1 56506757 56508198 PCT