Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0496 ATGCATTTCGCAAATCTCGATGACACTCCCATGTTCCGCCAACAGCTCCAGTGCTTGGAGGAAAGTGCAGAATCATTGCGCACCAGATGCACCAAGCTTTACAAAGGATGTCGAAAGTATACGGAAGGGCTTGGAGACTCATATCATGGGGACATTGCATTTGCAACTACCCTTGAAAATTTTGGAGGAGGGTATGCCGATCCTCATTTTGTTGCTTTGGGAGGACCTGTTATGACCAACTTCACTATTGCTCTCAGAGAAATCGCTACATACAAACAACTTCTTCGCTCACAGGTAGAGCACATGCTCGATGAACGGTTACAACACATCGTTAATGTTGACATCAATGAAGTCAAGGAAGCTCGTAAGTGTTTTGACAAAGCTTCACTTGTATACGACCAGGCACGGGATAAGTTTATGTCACTGAGAAAAAGCACTAAGATTGATATCGCCTCTGTCATAGAAGAGGAATTGCAAAATGCAAGAACGTCATTTGAGGAGGCCCGTTTCAATCTGGTTGGTGCTCTCAATAACATTGAGGTCAAGAAGAGATTTGAGTTTTTAGAGGTTGTTGCTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCATCTATTAACTCAGATGGGACCTTTCATTAACGAGGTATTGGATTTTGTACACCAGTCAAGAGAAAGATACGATACAGAGCAGATTTCACTTTATAAAAGAATGGAAGACTACAAAAGACAAGTTTATCAAGAAAGTAGATTGTCCTTGAATGGCCCTTATGGTGGTTCTCCTAGTGGAGACTCTCGGCATCCTTTTTCTAAAACATCAAATGAAGTGGCAGATGTTGTAATGGAATCAGCTGCAAATGGAAAGGTTCAAATCATTCGACAAGGATATCTTTCAAAACGATCCTCCAATTTGAGAGCTGACTGGAAAAGAAGGTATTTTGTCCTTGATAGTCGAGGAATGCTGTACTATTACCGCAAACCATGGCACGTGTCATATGGCAGCAATCAACTATCTCCAAGGAGGAACAGTGCCTCTGAAAATGGTTCTGGGCTACTGAGTCGATGGCTTTCTTCTCATTACCATGGGGGTGTCCATGATGAAAGTTCTGTAGCACGTCATACAGTAAATTTGCTGACATCAACAATCAAGGTTGATGCTGATCAGTCAGATTTAAGATTCTGCTTCAGGATTATTTCGCCATCGAAAAACTATACATTGCAGGCAGAAAATGCGGTGGACCAGATGGATTGGATGGAAAAGATAAATGGAGTGATTGCCTCCTTGTTGAGTGTCCAGACACTGGGAACGCCTCTTTCAGCTGACTCAGAAAACGATGACTCTTACTCTGCTGACGAGAGTGATATGTTAAAAGATTCTCCATCTGGGACTGAGAAACTTACATCCAAGAATTTCACCCCACATAACCACTTACGTCCGTCTAAAAGTTTGCACGTGCGTAAACACAGTCTAAGAAGTGAAAAGCCAATTGATATTCTTAGAAAGGTGAGCGGGAATGACAAATGTGCTGATTGTGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCTGGTATTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTGACACTTGATGTGAAAGTCTGGGATGCTTCTGTCTTAAGTATGTTTAAGTCACTCGGCAACGTTTTTGCAAACTCAGTTTGGGAGGAGCTGTTACATTCAAGGAGTAGTTTGCAAACTGTGGACACTGCTGTTGGTTCATCCAAGGCCAACAGAGTCAAGCTATTTGATGCAAGAAAACCAAAACACGATGATTCTATTTCGTTGAAGGAGAGGTTCATTCACGCAAAGTACTCTGAGAAAATATTTGTTTGCCGGACAAAGAAAGACGGCTCTGTCCTTTCACTGGCACAACAGGTGTTAGAAAGCATCTGTGCCAATGATATGAAAGCAGTGTACCAGCATATTGTCAAGTCGTGTGCGGATGTCAAAGCATTATCAGGCAACTCTTCCAACGTGGCTTCTTCAGGTAATTTAAATATTTCATCTCAAAGTGAAAAGCAGCTGATTGAGGACATGCAAGATGCTTCTAGTGTGCTTCACATGGCATGCCTAAATAGTGACGTTGGCATGGTGGAGCTGCTCCTCCAGCACGGGGCAGACATTAATGCTTGTGATTCAAGAGGTCGGACACCACTACATTACTGCATTATCAGAGGGAATACAAAAGCTGCAAAAGCGCTTATTATAAGGGGGGCTAATTCACGTGTCGCGGATAAAGAAGGCAACACTCCTCTTAAGCTTGCATCAGAATCTGGCTCTGTTGGCAAAGAAGTCCTCGCTCTCTTGGCCAGCAGATGA 2391 0.4258 MHFANLDDTPMFRQQLQCLEESAESLRTRCTKLYKGCRKYTEGLGDSYHGDIAFATTLENFGGGYADPHFVALGGPVMTNFTIALREIATYKQLLRSQVEHMLDERLQHIVNVDINEVKEARKCFDKASLVYDQARDKFMSLRKSTKIDIASVIEEELQNARTSFEEARFNLVGALNNIEVKKRFEFLEVVAGIMDAHLRYFQQGYHLLTQMGPFINEVLDFVHQSRERYDTEQISLYKRMEDYKRQVYQESRLSLNGPYGGSPSGDSRHPFSKTSNEVADVVMESAANGKVQIIRQGYLSKRSSNLRADWKRRYFVLDSRGMLYYYRKPWHVSYGSNQLSPRRNSASENGSGLLSRWLSSHYHGGVHDESSVARHTVNLLTSTIKVDADQSDLRFCFRIISPSKNYTLQAENAVDQMDWMEKINGVIASLLSVQTLGTPLSADSENDDSYSADESDMLKDSPSGTEKLTSKNFTPHNHLRPSKSLHVRKHSLRSEKPIDILRKVSGNDKCADCGKPEPDWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDASVLSMFKSLGNVFANSVWEELLHSRSSLQTVDTAVGSSKANRVKLFDARKPKHDDSISLKERFIHAKYSEKIFVCRTKKDGSVLSLAQQVLESICANDMKAVYQHIVKSCADVKALSGNSSNVASSGNLNISSQSEKQLIEDMQDASSVLHMACLNSDVGMVELLLQHGADINACDSRGRTPLHYCIIRGNTKAAKALIIRGANSRVADKEGNTPLKLASESGSVGKEVLALLASR* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0496 796 SUPERFAMILY Ankyrin repeat 687 793 IPR036770 -
Lja4g0496 796 ProSiteProfiles Ankyrin repeat profile. 738 770 IPR002110 GO:0005515
Lja4g0496 796 ProSiteProfiles Ankyrin repeat region circular profile. 738 770 - -
Lja4g0496 796 CDD BAR_SFC_plant 15 215 IPR035670 -
Lja4g0496 796 ProSiteProfiles PH domain profile. 293 429 IPR001849 -
Lja4g0496 796 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Lja4g0496 796 PANTHER CENTAURIN/ARF 1 796 IPR045258 GO:0005096
Lja4g0496 796 MobiDBLite consensus disorder prediction 255 274 - -
Lja4g0496 796 Pfam Ankyrin repeats (many copies) 707 759 IPR002110 GO:0005515
Lja4g0496 796 Pfam BAR domain of APPL family 6 232 - -
Lja4g0496 796 Gene3D - 655 796 IPR036770 -
Lja4g0496 796 SMART PH_update 294 431 IPR001849 -
Lja4g0496 796 MobiDBLite consensus disorder prediction 441 487 - -
Lja4g0496 796 Pfam PH domain 295 428 IPR001849 -
Lja4g0496 796 SMART 5bar 5 218 IPR004148 GO:0005515|GO:0005737
Lja4g0496 796 PRINTS HIV Rev interacting protein signature 527 544 IPR001164 GO:0005096
Lja4g0496 796 PRINTS HIV Rev interacting protein signature 508 527 IPR001164 GO:0005096
Lja4g0496 796 PRINTS HIV Rev interacting protein signature 550 571 IPR001164 GO:0005096
Lja4g0496 796 Gene3D - 286 437 IPR011993 -
Lja4g0496 796 SUPERFAMILY PH domain-like 203 428 - -
Lja4g0496 796 CDD ArfGap 499 628 - -
Lja4g0496 796 SMART ANK_2a 738 767 IPR002110 GO:0005515
Lja4g0496 796 SMART ANK_2a 705 734 IPR002110 GO:0005515
Lja4g0496 796 MobiDBLite consensus disorder prediction 463 480 - -
Lja4g0496 796 ProSiteProfiles Ankyrin repeat profile. 705 737 IPR002110 GO:0005515
Lja4g0496 796 ProSiteProfiles ARF GTPase-activating proteins domain profile. 496 641 IPR001164 GO:0005096
Lja4g0496 796 Gene3D Arf GTPase activating protein 477 642 IPR038508 -
Lja4g0496 796 ProSiteProfiles Ankyrin repeat region circular profile. 705 736 - -
Lja4g0496 796 Pfam Putative GTPase activating protein for Arf 499 634 IPR001164 GO:0005096
Lja4g0496 796 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 796 - -
Lja4g0496 796 CDD PH_ACAP 296 433 - -
Lja4g0496 796 SUPERFAMILY ArfGap/RecO-like zinc finger 496 635 IPR037278 -
Lja4g0496 796 SMART arf_gap_3 496 641 IPR001164 GO:0005096
Lja4g0496 796 SUPERFAMILY BAR/IMD domain-like 6 316 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0496 Lja-Chr4 4056733 4065372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0496 500 634 C2H2 Transcription Factor Family AT4G21160 41.176 1.41e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0496 K12489 - gmx:100792517 1208.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4364 1 56376209 56384205 Lja4g0496 4 4056733 4065372 ECH
Lja4g0496 4 4056733 4065372 Lja4g0496 4 4056733 4065372 ECH