Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0492 ATGGCGACATCGGAGGTAACGAACAAGGGAAATTCTGTGAACGGAATGGGTGACACCAACTACAACAACAACAACAACGATGGTAGTAGAAACGGTGCAGGAGAGGGTCAGAGTGGTTCATCATCGTCACCGACGAGAGATGCGGAAACTGCACTTTACAGGGAGCTATGGCATGCTTGTGCTGGTCCTCTGGTTACTGTGCCAAGAGAAGGAGAGCGCGTCTTCTATTTTCCTCAGGGACACATTGAACAGGTGGAGGCATCGACGAATCAGGTAGCGGAACTACACATGCCTGTTTACGATCTCCCACCCAAGATCTTGTGTCGGGTCATCAACGTGATGCTCAAGGCGGAGCCAGACACAGATGAGGTGTTTGCTCAGGTGACCTTACTTCCAGAACCAAATCAAGATGAGAATGCGGTGGAGAAAGAGGCTAGGCTGCCGCCGCCACCACGATTTCACGTGCATTCGTTCTGTAAAACGCTCACAGCGTCGGATACCAGTACACACGGTGGGTTTTCAGTGCTGAGACGACATGCTGATGAATGCCTCCCTCCGCTGGACATGTCAAAACAGCCACCTACCCAGGAATTGGTAGCCAAGGACCTCCATGGGAGCGAGTGGCGATTCAGGCATATCTTTCGCGGTCAACCACGTAGACACTTATTGCAAAGCGGTTGGAGTGTTTTTGTCAGCTCTAAGAGGCTAGTTGCTGGGGATGCATTTATTTTCCTAAGAGGTGAGAATGGGGAACTTCGAGTGGGTGTCAGGCGTGCCATGAGACAGCAGGGTAATGTTTCATCTTCAGTTATCTCAAGCCACAGCATGCATCTCGGTGTCCTTGCAACTGCTTGGCATGCCAACTTGACCGGGACCATGTTTACTGTTTATTACAAACCTAGGACCAGTCCAGCTGAATTTATTGTTCCTTATGATCAATACATGGAGTCCCTTAAAAATAATTATACCATAGGTATGCGGTTCAAAATGAGGTTCGAGGGTGAAGAGGCTCCCGAGCAAAGGTTTACTGGTACCATCGTTGGAATTGAAGATGCTGATTCCAAAAGTTGGCCAAAATCTAAATGGAGATGTCTCAAGGTGAGATGGGATGAAACATCTAACATACCACGTCCTGAGAGGGTTTCCCCATGGAAAATAGAGCCTGCTCTCGCTCCTCCAGCAATGAATCCTCTTATAATGCCCAGACCCAAAAGGCCTCGGTCTAATGTGGTTCCATCATCCCCCGATTCTTCGATTCTTACTCGAGAAGCATCTTCTAAAGTAAACGCAGACCCTTTGCCCGCCAGTGGGTTCCCAAGGGTCTTGCAAGGTCAAGAATCATCGACCTTGAGAGGTAATTTTGCTGAGAGCATTGAGTCTAATACTGCAGAGAAGTCTGTTCCGTGGCCACGTGCAGCAGATGATGAAAAGATTGACGCTGCTTCTACATCAAGAAGGTATGGATCAGAGAGCTGGATGTTAATGGCAAGGCAAGAGCCAACATATTCAGATCTTCTTTCAGGCTTTGGGGCCCGTGTAGATCATTCTTCCCATCCATCATTTGTCAATCAAACTGGTACTGTAGCTAACACTGGTAGGAAAAGTTTGATCCATCGCGAAGGGAAGCATAATGCGCTTACTCCGTGGACTGGAATGCCTTCTAGTCTATCACTCAACATCTCGGACTCTAAAACAAAAGGTTCGACACTAGGCAGTGATGTAGCTTATCAAGTTCAAGGGAACTCGAGGTATAGTGCATTCGGTGAATATCATGTCCTTCATGGACACAAGGTTGAACATCCACATGGAAACTTTTTGATGAAACAACCTGTTCCTACCCAATATGAGAGTCCTCATTCAAAAGAACTATTGCCCAGACAATTGTCAGGAAACAGTTGTGGGGTTGCAAAACCCAAAGATGGTGACTGTAAGCTATTCGGCATCTCTCTTAGTAGCTCCATTGTACCAGAGCCTGCTACATCACAAAGAGACGTTGAAAGTGAGCCAGTTAGTCACATGAATATTACATTACAACAACATCGTACATTTGAAAATGATCAGAAGTCTGGACATACAAGAGGCACAAAACCAGCAGATGGTCAAGTTGTAGCTGATGACCATGAGAGCCTACAAACTTCTCAGCCACTTGTTAAAGATGTTCAACTTAATTCCCATAGTGGTTCAGCTAGAAGCTGCACTAAAGTTCACAAGAAGGGGATCGCGCTTGGTAGGTCAGTGGACCTTTCAAAGTTTAATGACTACGATGAATTGATTGCTGAGTTGGATCAGCTGTTTGAATTTGGAGGTGAATTAACTTCTCCACATAAGGATTGGCTTGTTGTCTACACTGATAATGAGGGGGACATGATGCTTGTTGGGGATGATCCGTGGCAGGAGTTTTGTGCCATGGTCCGCAAGATATATATCTACCCTAAGGAGGAGATTCAGAAAATGAGCCCCGGTACTTTGAGTTCAAAAAATGAAGAGAATCATTCAGCTAGTGAAGGTGCAGATGCACAAGAAATTAAATGCCAGCCGCCACAATCAGCTTCAGATGCCTGA 2562 0.4637 MATSEVTNKGNSVNGMGDTNYNNNNNDGSRNGAGEGQSGSSSSPTRDAETALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVAELHMPVYDLPPKILCRVINVMLKAEPDTDEVFAQVTLLPEPNQDENAVEKEARLPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVSSSVISSHSMHLGVLATAWHANLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADSKSWPKSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPAMNPLIMPRPKRPRSNVVPSSPDSSILTREASSKVNADPLPASGFPRVLQGQESSTLRGNFAESIESNTAEKSVPWPRAADDEKIDAASTSRRYGSESWMLMARQEPTYSDLLSGFGARVDHSSHPSFVNQTGTVANTGRKSLIHREGKHNALTPWTGMPSSLSLNISDSKTKGSTLGSDVAYQVQGNSRYSAFGEYHVLHGHKVEHPHGNFLMKQPVPTQYESPHSKELLPRQLSGNSCGVAKPKDGDCKLFGISLSSSIVPEPATSQRDVESEPVSHMNITLQQHRTFENDQKSGHTRGTKPADGQVVADDHESLQTSQPLVKDVQLNSHSGSARSCTKVHKKGIALGRSVDLSKFNDYDELIAELDQLFEFGGELTSPHKDWLVVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENHSASEGADAQEIKCQPPQSASDA* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0492 853 Pfam B3 DNA binding domain 158 259 IPR003340 GO:0003677
Lja4g0492 853 MobiDBLite consensus disorder prediction 441 464 - -
Lja4g0492 853 MobiDBLite consensus disorder prediction 1 47 - -
Lja4g0492 853 MobiDBLite consensus disorder prediction 392 483 - -
Lja4g0492 853 Pfam Auxin response factor 284 366 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja4g0492 853 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 36 837 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja4g0492 853 SUPERFAMILY DNA-binding pseudobarrel domain 154 287 IPR015300 -
Lja4g0492 853 SMART B3_2 158 260 IPR003340 GO:0003677
Lja4g0492 853 ProSiteProfiles B3 DNA-binding domain profile. 158 260 IPR003340 GO:0003677
Lja4g0492 853 Gene3D - 725 819 - -
Lja4g0492 853 MobiDBLite consensus disorder prediction 469 483 - -
Lja4g0492 853 MobiDBLite consensus disorder prediction 410 425 - -
Lja4g0492 853 MobiDBLite consensus disorder prediction 819 853 - -
Lja4g0492 853 PANTHER AUXIN RESPONSE FACTOR 2 36 837 - -
Lja4g0492 853 Pfam AUX/IAA family 776 817 IPR033389 -
Lja4g0492 853 SUPERFAMILY CAD & PB1 domains 733 807 - -
Lja4g0492 853 Gene3D - 321 391 - -
Lja4g0492 853 Gene3D - 155 260 IPR015300 -
Lja4g0492 853 ProSiteProfiles PB1 domain profile. 730 812 IPR000270 GO:0005515
Lja4g0492 853 CDD B3_DNA 156 258 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0492 Lja-Chr4 4026728 4032521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0492 1 853 B3 DNA Binding Superfamily AT5G62000 62.286 0.0 1063
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja4g0492 B3 3.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0492 - - gmx:100815956 1384.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0492 4 4026728 4032521 Lja4g0492 4 4026728 4032521 ECH
Lja4g0492 4 4026728 4032521 Lja1g4363 1 56339671 56344937 PCT