Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0488 ATGGCAAAAGAGCAAAAGCAGGGCAAAGGCCAAGACAGGGAATTGGAACTGGAAAGTGACGAGGGTGAGGCTGAGATTGAGGTTCCATTGCCTCTCACAGCAACTTCTCGGGTTTTGTATATGTTGGGAGATATCACTGCAGGGCCTGCGTTTAGGTTCACGCAATGGCTCCAATTGGTTCGTAGACGCACTGCCAAATACCGTTCCTCTGGCTTCCCTCGCCGCCTTTCTATCACCATGTCTTCTAGTTCTTGCATCAGAGAATCGATTGAGGACTTTAAAGGGGACCTACACCCTGATCAAACAGAGATTAGCCTGTGGGAGAGGCTCGGGAAAGCTGCCATGTTGGATATTGAATCAAGCTCCTTTTCTTGGGACACGCTCTCGTCGCTGCACCACACCGAACACAGCAGTAGCAATGAACATTCTGAGGATGAAATGTGCAAGCCTCTTGAGGTAACTGTAAATTCTGGAGGGGTTGTCTTCTTTGCCTTTTTCAATTGCCTTGGGAGTTCTGACACTTTTCCAAAAGAAGCAGCAGCTGTTATAAAGATAGCATCATCAAGAATGGCAACACAGTCTGAACGCCTTGGTTATGAATTCGCCAAGTGGTTGGGAGTCCGAACTCCACAGGCTAGAGTCATTCACAATACTAGTCCAGAATGGCAACAAATAAAGGAAGCTGCAGAAAAGGCTAGAGAAGCAGCAAATTCTGAGGGTGATGAAATTGGTGAAGTGACGTGTTTTGAACTTTTAGAAGCACTTGAGCTTAGCCGATGTCTCTTTTTTATGAATTATGTACATGGTTCACCTTTACTTGACAACTCCAGTGCATTTGAGTCATGGGAATCTGCAGAAAGAACATCAGAAGCTCTTGGCAGGGTACTGATGCTGGACCTTGTCATCAGAAATGAAGACAGACTCCCTTGCCGGGTGCTTAGATGGCGTGGGAATTGTGCAAATTTGTTGTCGGCCGAAAAGATGATCTCAGCAAATACAGATACTCTAGGATCAGCTTTTGATTCTGCAATTAATCGATACAAACCGAAGTTGATTAAGGCACTTCAAAATGAAAGAAGGTCAACTTCAGTTGATAGCAGACTCAGCTCTCATGATTCTGGCTTGATATCACAAACCTCTGATCTTTCAGAGATCACAGAATCACCAAGATCCACTGACATAAGCCTTAGACGTCAAACATCAGAAGAATCACTGTCTTCTGCTGACCATAACATCGTAGCAATTGATTCCGGTGTTCCCCGGCGACCCCCTGCGGGGAAACGCGCAAATGATCAGGTTAATTACCCTAAGTTGGTTGAGTTGCTGATGAATAGTTCTGGATATGCCTCTAACCTGTTATATGATATAACTGGAGGGAAATTAGGTTGTCCTCCATCAGAAGACATGGATACAACTGATGTACATACAAGTGAAATGAGATCAGTAATCCGTGCATTCAGGACAGGCTTCCGTGATGCTCTTAGAGATCTGCAGGGATTCCATATATTCCTACTCACTCTTCACCAAAGACTAGATACTTTATTACGATCATTTATGAACATTGTAAGCAAAATATCTGCGGGGGAATCTGACAAAGACGATTTTTTGATTCCTGACTCACCTTCACTGGCTCCTGGTGGTTGTTTCTCCTCTCCAACAAGTAAGGAGAGGCTTGCTAATGATAACCATCAGGATTTTACTGACACAGAATCACATAAAACTGCTTGTAGGGCATCATCTTTGGGTAATAGAGACGGCTATGACTCTACTCCTATGTCAAGAGAAAATTGGCATGGAAAGTTCTCGAAAGGAAATGGGGAGCCACTTCGTAATCTGCGCCTGACAGCTAAGCTCCGCGACTTCAATAAATTTGCCAAGGTTTTTGATGCTGAATCTAGTAAGGAATTGGAACAGTGGAATGAAATGCTTAAAAATGACGCCGTCAAACTATGCCAGGAGAACAATTTCAATTCAGGATTTTTCGAGGGTAGTGATAATAACAGTGCTGTTGATGCATATGAACTCAAGGTCAGACTAGAGCACATCCTTGAGAGAATTGCATTGATATCCGAAGCTGCAAGTACAGAGAGACCATCTGCTGTTACAAGTAGTCTGTTCATTGGTGGAGCACTGGCGGCAAGATCCGTATACACACTGCAATACTTGGGAATCACGCATATTTTGTGTTTGTGTACCAATGAGATCGGACAATCTGAATCTCAATTTCCTGATCTATTCGAGTACAAAAATTTCTCAGTGTGTGACAGTGAAGATTTTGACATCAACAACATATTTGAAGAAGCATGTGATTTTATAGATTATGTTGAACAAAAAGGCCAGAGAGTTTTAGTTCATTGCTTTGAAGGGAGAAGCAGAAGTGTTGCGTTGGTCCTTGCTTACTTAATGCTCAGGAAGAAGTATACTTTATTAGAAGCATGGCAGGCTCTGAAACGAGTACACCGGCGAGCGCAGCCCAATGATGGCTTTGCAAAGATCTTACAAGAATTGGATCAGAAACTACATGGGAAGGTTTCAATGGAGTGGCAGCAGAGGAAGCCAACTATGAAAGTTTGTCCGGTCTGCGGAAAAAATGCTGGACTAAGCAGCAGCTCACTCAAGCTGCATCTGCAGAAAGCACACAGAAAGCTGTCATCTGGGAGTGTAGATAGTGCCATGACAATGGAGATTCAGAAGGCATTAACAGCTTTGAAGATTAGCCGTGGCGGAAGTGTCAGCCCCACACAAAGATCTTCCCACTCCATAATAGATCAATAG 2775 0.4371 MAKEQKQGKGQDRELELESDEGEAEIEVPLPLTATSRVLYMLGDITAGPAFRFTQWLQLVRRRTAKYRSSGFPRRLSITMSSSSCIRESIEDFKGDLHPDQTEISLWERLGKAAMLDIESSSFSWDTLSSLHHTEHSSSNEHSEDEMCKPLEVTVNSGGVVFFAFFNCLGSSDTFPKEAAAVIKIASSRMATQSERLGYEFAKWLGVRTPQARVIHNTSPEWQQIKEAAEKAREAANSEGDEIGEVTCFELLEALELSRCLFFMNYVHGSPLLDNSSAFESWESAERTSEALGRVLMLDLVIRNEDRLPCRVLRWRGNCANLLSAEKMISANTDTLGSAFDSAINRYKPKLIKALQNERRSTSVDSRLSSHDSGLISQTSDLSEITESPRSTDISLRRQTSEESLSSADHNIVAIDSGVPRRPPAGKRANDQVNYPKLVELLMNSSGYASNLLYDITGGKLGCPPSEDMDTTDVHTSEMRSVIRAFRTGFRDALRDLQGFHIFLLTLHQRLDTLLRSFMNIVSKISAGESDKDDFLIPDSPSLAPGGCFSSPTSKERLANDNHQDFTDTESHKTACRASSLGNRDGYDSTPMSRENWHGKFSKGNGEPLRNLRLTAKLRDFNKFAKVFDAESSKELEQWNEMLKNDAVKLCQENNFNSGFFEGSDNNSAVDAYELKVRLEHILERIALISEAASTERPSAVTSSLFIGGALAARSVYTLQYLGITHILCLCTNEIGQSESQFPDLFEYKNFSVCDSEDFDINNIFEEACDFIDYVEQKGQRVLVHCFEGRSRSVALVLAYLMLRKKYTLLEAWQALKRVHRRAQPNDGFAKILQELDQKLHGKVSMEWQQRKPTMKVCPVCGKNAGLSSSSLKLHLQKAHRKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQRSSHSIIDQ* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0488 924 ProSiteProfiles Dual specificity protein phosphatase domain profile. 697 842 IPR020422 GO:0006470|GO:0008138
Lja4g0488 924 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 762 818 IPR000387 GO:0016311|GO:0016791
Lja4g0488 924 Pfam Actin-fragmin kinase, catalytic 103 418 IPR015275 -
Lja4g0488 924 Gene3D - 273 402 IPR036940 GO:0016301
Lja4g0488 924 MobiDBLite consensus disorder prediction 573 590 - -
Lja4g0488 924 MobiDBLite consensus disorder prediction 1 16 - -
Lja4g0488 924 Pfam Dual specificity phosphatase, catalytic domain 713 838 IPR000340 GO:0008138|GO:0016311
Lja4g0488 924 CDD DSP 698 835 - -
Lja4g0488 924 MobiDBLite consensus disorder prediction 362 405 - -
Lja4g0488 924 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 1 924 - -
Lja4g0488 924 MobiDBLite consensus disorder prediction 564 602 - -
Lja4g0488 924 SMART dsp_5 697 839 IPR020422 GO:0006470|GO:0008138
Lja4g0488 924 SUPERFAMILY Protein kinase-like (PK-like) 55 432 IPR011009 -
Lja4g0488 924 MobiDBLite consensus disorder prediction 1 22 - -
Lja4g0488 924 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 697 842 IPR029021 -
Lja4g0488 924 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 1 924 IPR035010 GO:0004721|GO:0009737|GO:0043622
Lja4g0488 924 Gene3D Protein tyrosine phosphatase superfamily 680 852 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0488 Lja-Chr4 3980449 3986798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0488 7 908 Protein tyrosine phosphatase (PTP) family AT5G23720 64.325 0.0 1128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0488 K14165 - gmx:100791993 1488.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0488 4 3980449 3986798 Lja4g0488 4 3980449 3986798 ECH