Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0484 ATGGCTCCCTCTCTTGTCCCTGGATTCCTATACTCATCAAAAACACTCTCCCAATTGGATTCATCGATCAACACCAATCATGGTTTGCCACCATTGTCCACCACCTCCTCCATTGGATCACATTCATCATCACCATCACCACAAGGTAGGAGTCCTATGATCCCTTCACCAAAGGAGGGTATCCCCTTGTTTTCCCCTGCTTACTATGCAGCTTGTAGTGCCGGCGGCGTCTTCAGCTGTGGCCTTACCCACATGGCTGTCACTCCTCTTGATCTCGTCAAATGTAACATGCAGATTGACCCTTTAAAGTACAAAAGCATCACATCAGGATTTGGAGTTTTACTGAAGGAGCAGGGCGCTAAAGGTTTCTTCAGGGGATGGGTGCCTACTTTGTTTGGTTACAGTGCTCAGGGAGCATGCAAATTTGGGTTTTATGAGTTCTTCAAGAAGTACTACTCAGATCTTGCAGGACCTGAGAATGCAGCCAAGTACAAAACGTTCATATATCTTGCTGGTTCTGCTTCAGCAGAAGTTATTGCTGATGTTGCACTTTGTCCCATGGAAGCAGTGAAAGTTCGTGTGCAAACTCAGCCTGGCTTTGCTAGAGGTTTGTCTGATGGGTTACCCAAGTTTGTCAAGGCTGACGGTGTAGCTGGGTTGTATAAAGGACTTGTTCCTCTTTGGGGCCGTCAGATTCCATATACCATGATGAAATTTGCTTCCTTTGAGACTATTGTGGAGATGATCTACAAACAAGTCATCCCAACCCCTAAAGAACAGTGCAGCAAAAATAAGCAGCTTGGAGTGAGTTTTGCAGCAGGATATATTGCAGGTGTACTCTGTGCAATTGTCTCGCACCCAGCTGACAACCTCGTTTCTTTTCTTAACAATGCCAAGGGAGCCACTGTTGGCGATGCTGTGAAGAAGATTGGGGTGGTGGGTCTTTTCACTCGCGGCCTTCCGCTTCGTATTGTTATGATTGGAACACTAACTGGAGCTCAGTGGGGACTATATGATTCATTCAAAGTGTTTGTAGGGCTGCCTACAACTGGTGGAAGTGCTCCTGCTCCTGTGAAATAG 1080 0.4648 MAPSLVPGFLYSSKTLSQLDSSINTNHGLPPLSTTSSIGSHSSSPSPQGRSPMIPSPKEGIPLFSPAYYAACSAGGVFSCGLTHMAVTPLDLVKCNMQIDPLKYKSITSGFGVLLKEQGAKGFFRGWVPTLFGYSAQGACKFGFYEFFKKYYSDLAGPENAAKYKTFIYLAGSASAEVIADVALCPMEAVKVRVQTQPGFARGLSDGLPKFVKADGVAGLYKGLVPLWGRQIPYTMMKFASFETIVEMIYKQVIPTPKEQCSKNKQLGVSFAAGYIAGVLCAIVSHPADNLVSFLNNAKGATVGDAVKKIGVVGLFTRGLPLRIVMIGTLTGAQWGLYDSFKVFVGLPTTGGSAPAPVK* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0484 359 Gene3D Mitochondrial carrier domain 68 345 IPR023395 -
Lja4g0484 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 164 248 IPR018108 -
Lja4g0484 359 SUPERFAMILY Mitochondrial carrier 68 339 IPR023395 -
Lja4g0484 359 PANTHER PHOSPHATE CARRIER PROTEIN 4 359 - -
Lja4g0484 359 MobiDBLite consensus disorder prediction 29 49 - -
Lja4g0484 359 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 4 359 IPR044677 GO:0005315|GO:1990547
Lja4g0484 359 MobiDBLite consensus disorder prediction 29 55 - -
Lja4g0484 359 Pfam Mitochondrial carrier protein 165 252 IPR018108 -
Lja4g0484 359 Pfam Mitochondrial carrier protein 70 153 IPR018108 -
Lja4g0484 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 67 151 IPR018108 -
Lja4g0484 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 265 344 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0484 Lja-Chr4 3955549 3958160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0484 4 357 Chloroplast and Mitochondria Gene Families AT5G14040 75.833 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0484 K15102 - gmx:100800530 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0484 4 3955549 3958160 Lja4g0484 4 3955549 3958160 ECH