Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0482 ATGGCAGCTTTTTCACACCACCACTACCATCCCTTTCTTGTTGACTCTACATCACGCTTCATAAAGATGTCGTCTTTGGAGGATGAACTTCTTCAACCCCATATAAACACTACTACCCTTCATCAAGAGACTTCATTTTCTGTCACAGAAACTAGCTCTGTTGATCAAAGCTCCAAGATTACCATCAGTGACAGTGAACTTTCTGTGGAGAAAAATCAGAGTCCTGAGACCTCCATGGTGGTGGCTTCTATGGAAAAGAAGAGAAGATCCAGGAATGGAAGCCCCTTATCTAAGGACCCAAAAGGGGGAAGCAAGAAACAAAAGAAGGGTAATGGTGGGGTGAAAGAAGAGGACATGGCAAAAGAAGAGAAGAAGGATAAGAAAAAGGGCCCTGAAGAGCCCTCAACAGGCTATATCCATGTCAGAGCAAGAAGGGGCCAGGCAACAGATAGCCACAGCCTTGCTGAAAGGGTGAGAAGAGAGAAAATAAGTGAGAGGATGAACATGTTGCAGCAACTTGTGCCAGGCTGTGATAAGGTAACAGGGAAGGCCCTTGTGTTGGAGGAAATAATCAATTATGTTCAGTCCCTACAACATCAAGTAGAGTTTTTGTCAATGAAACTTGCTTCAGTGAATCCCATGCTCTTTGATATGGCCATGGATCTAGACAATCTCTTGGTTAGACCAGAACAGAAAGTAAATAGCTTAGCATCACCACCACTAGTACTACCATGTGTACCATTATGCAACCCCAACCCGGGTACAACCTTTGCTGATACATCAACCCTGAACCCTAGCACCAGCTTCCCCACTGCTAATCATGACTATCTTTTGGATTATCCATGTTCAGATTTTCTTCAAGGGCAGCAGAGACCAAATTTCTTATGTGAGCATACCGGTGGTCCATTTTGGGACGCAGAAGACCAACGGCAAAAGTTTCTTAATCCATATGGATACGGCAACAATTCATGTTCCTTAAATTAA 984 0.437 MAAFSHHHYHPFLVDSTSRFIKMSSLEDELLQPHINTTTLHQETSFSVTETSSVDQSSKITISDSELSVEKNQSPETSMVVASMEKKRRSRNGSPLSKDPKGGSKKQKKGNGGVKEEDMAKEEKKDKKKGPEEPSTGYIHVRARRGQATDSHSLAERVRREKISERMNMLQQLVPGCDKVTGKALVLEEIINYVQSLQHQVEFLSMKLASVNPMLFDMAMDLDNLLVRPEQKVNSLASPPLVLPCVPLCNPNPGTTFADTSTLNPSTSFPTANHDYLLDYPCSDFLQGQQRPNFLCEHTGGPFWDAEDQRQKFLNPYGYGNNSCSLN* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0482 327 MobiDBLite consensus disorder prediction 42 154 - -
Lja4g0482 327 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 327 IPR024097 GO:0006355
Lja4g0482 327 MobiDBLite consensus disorder prediction 42 80 - -
Lja4g0482 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 213 IPR036638 GO:0046983
Lja4g0482 327 PANTHER BASIC HELIX LOOP HELIX PROTEIN BHLH8 1 327 - -
Lja4g0482 327 MobiDBLite consensus disorder prediction 82 154 - -
Lja4g0482 327 SMART finulus 153 203 IPR011598 GO:0046983
Lja4g0482 327 Pfam Helix-loop-helix DNA-binding domain 151 198 IPR011598 GO:0046983
Lja4g0482 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 197 IPR011598 GO:0046983
Lja4g0482 327 CDD bHLH_AtBPE_like 137 222 - -
Lja4g0482 327 Gene3D - 144 218 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0482 Lja-Chr4 3939708 3942314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0482 94 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 55.975 2.77e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g0482 HLH 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0482 - - gmx:100796018 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0482 4 3939708 3942314 Lja4g0482 4 3939708 3942314 ECH