Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0479 ATGGGTGATGACCGCCAACATGAAAACGGTAGGCATAAGATGGAATACTACAGAGGAGCTCGTTCACCGTGGGATATGGATCACCAGCATCAAGTAAAGGAGCCAAATGCACTAGTTATGAACAAGAAACTTAGGTCTATTATGGCTGAAAGGCAAGCTGCCCTTCTAGAACTTGAGCTAGAGGCTGCTATATCAGAAAAGAATGAAGCCTTGGCTGCCCGAGATTTAGCCCTTCGGCAGAGGGATGAAGCACTTGCTCAGAGGGATAATGCCCTATTGCAACGAGACAATGCCCTTGCAGCCCTTCAAAATCGAAACAGTGCTGTCAACTTCCCTTTCAGTGGTGGAAGTCAACGTGGATCGAAGTGGATTCACCATTCTCCAAACCATCTCTCTGACATAACAGAAACTTCATACATCACAAAGGATATGATAATAAGGGATGCATCACCAGTGACTATTGTAACTCCTGAAGATGTCAGATCTCATCAAGCTAAGAGAACGAAAGAGAGCAAGGTAATTAATTCCAAGTCATCGAAGCCACCTTGCAAAGTAAAGAAATTGGGTGAGGATTTAAATAAGAAGGCTTCTTCTGAAGGGACAAAGTTCAGATCTGAATGGGATAGTCAGGATGTTGGCTTGAATTTGATTGCATTTGATGAAACTATCATGCCAGTCCCAGTTTGCACATGCACCGGCATAGCACGACAGTGCTACAAATGGGGTAACGGCGGATGGCAGTCATCTTGTTGTACCACCACATTGTCGGTGTATCCGCTACCACAGCTTCCGAACAAGCGCCACGCCCGCATAGGAGGGCGAAAGATGAGTGGAAGTGTCTTCACAAGACTTCTCAGTAAGTTGGCCTCAGAAGGCCATGATATATCTATACCATTGGATCTTAAGAACTACTGGGCTAGACATGGAACAAATCGCTACATTACCATCAAGTAG 954 0.4518 MGDDRQHENGRHKMEYYRGARSPWDMDHQHQVKEPNALVMNKKLRSIMAERQAALLELELEAAISEKNEALAARDLALRQRDEALAQRDNALLQRDNALAALQNRNSAVNFPFSGGSQRGSKWIHHSPNHLSDITETSYITKDMIIRDASPVTIVTPEDVRSHQAKRTKESKVINSKSSKPPCKVKKLGEDLNKKASSEGTKFRSEWDSQDVGLNLIAFDETIMPVPVCTCTGIARQCYKWGNGGWQSSCCTTTLSVYPLPQLPNKRHARIGGRKMSGSVFTRLLSKLASEGHDISIPLDLKNYWARHGTNRYITIK* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0479 317 Coils Coil 53 73 - -
Lja4g0479 317 SMART GAGA_bind_2 1 317 IPR010409 -
Lja4g0479 317 PANTHER - 1 317 IPR010409 -
Lja4g0479 317 PANTHER PROTEIN BASIC PENTACYSTEINE4 1 317 - -
Lja4g0479 317 MobiDBLite consensus disorder prediction 160 174 - -
Lja4g0479 317 MobiDBLite consensus disorder prediction 159 181 - -
Lja4g0479 317 Pfam GAGA binding protein-like family 9 317 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0479 Lja-Chr4 3913561 3917924 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0479 1 317 BBR or BPC Transcription factor family AT2G21240 55.799 7.92e-121 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Lja4g0479 GAGA_bind 3.7e-97 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0479 - - gmx:100785547 528.865