Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0478 ATGGGTTGCGCGCTAGGAACTCCGGCCGTCGCCGGAGATCGCCGCCGACGTAGCCCTGCTGCTGCTGAGGGAGGCAAGAATGCCGTCAGTGTTCCTGACAGGCAGAAGGACCCCAACGCCGGCGAAGCTCCGGCGCCTGAGCTCCGGAAATATCGACTGGATTCATTCACGGCGACCCATCAGGGTTGGCCGCCGTGGTTGATGGCGGTGGCCGGCGATGCTATCCGGGACTGGACTCCTCGCCGTGCCAACACGTTTGAGAAGCTTGCTAAGATTGGGCAAGGTACTTATAGCAACGTGTACAAAGCTAGAGACCTTGTTACAGGGAAGATAGTGGCTTTGAAGAAAGTTAGATTTGATAATTTGGAGGCAGAGAGTGTGAAGTTCATGGCTAGAGAGATACTTGTTTTGAGGAGGCTTGATCACCCCAATGTGGTGAAGCTTGAGGGCTTGGTTACTTCAAGAATATCATCGAGTATTTACTTGGTGTTTGAGTACATGGAGCATGATCTTGCTGGTCTTGCAGCTGGGCCTGGTGTCAAATTCTCTGAGCCTCAGGTAAAATGCTATATGAAGCAATTACTGTCTGGCCTTGAGCATTGCCACAGCCGAGGTGTGTTGCACCGTGATATCAAAGGTTCCAATCTGCTTATTGACAATGAAGGAGTACTTAAAATTGCAGATTTCGGACTGGCAAATTTCTATGATTCTAAGCAAAAGCATCCCATGACTAGTAGAGTTGTGACCCTTTGGTATCGTCCCCCTGAGCTTCTTCTTGGGGCTACATTCTATGGCGTCGGTATTGATCTTTGGAGCGCTGGCTGCATATTGGCAGAGTTGCTTGCTGGAAAGCCAATCATGCCTGGACGAACAGAGGTTGAGCAACTGCACAAAATATTCAAGTTATGTGGCTCTCCGTCAGAGCAATATTGGAAGAAATATAGATTGCCAAATGCTACACTCTTTAAGCCGCAGCAACCATATAAAAGATGCATCATAGAAACGTTCAAGGATTTTCCATCTTCTTCATTACCTCTAATCGAAACTCTTCTTGCAATAGATCCGGTTGATCGTGGCAATACCTCAGCTGCTCTCAACAGTGAATTTTTTAACACTGAGCCCTATGCTTGTGAACCATCAAGTTTACCAAAGTATCCTCCTTCCAAAGAATTGGACGTAAAACTCAGAGATGAAGCAGCAAGAAGGCGAAAAGCTCTGAGTGGAAAAAACAATGCAGTTGATGGTACCAAAAGAGTTAGAACACGTGAGCGCGGCTGTGCTATTCCAGCCCCGGAAGCCAATGCAGAGATCCAAACAAACTTAGATAGGATGAGAGTTGTGACCCGTGCAAATGCGAAGAGCAAAAGTGAGAAATTTCCACCTCCTCATCAAGATGGAGCTGTTGGATATCCACTGGATGCATCAAATAAAGGAGCTGTTTCATTTGGAGCCACTGAAACGTCTTTTAGCTCCACCATATCTAATTCAAAGCCTTCTGGATCCGTTGGAAGCTATGCGTCCAGCTCTTACAGAGGGTGGAAAACTAACAAAGCAGGTTCCCATTCGGCGCCATCATGGAAACTTATGCGTGCATTCAAGCCTTCAACTGTTGGCCTTTCTTTCAATTTATTATTTAGGAGAAAATAA 1647 0.4681 MGCALGTPAVAGDRRRRSPAAAEGGKNAVSVPDRQKDPNAGEAPAPELRKYRLDSFTATHQGWPPWLMAVAGDAIRDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEAESVKFMAREILVLRRLDHPNVVKLEGLVTSRISSSIYLVFEYMEHDLAGLAAGPGVKFSEPQVKCYMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGVLKIADFGLANFYDSKQKHPMTSRVVTLWYRPPELLLGATFYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEQYWKKYRLPNATLFKPQQPYKRCIIETFKDFPSSSLPLIETLLAIDPVDRGNTSAALNSEFFNTEPYACEPSSLPKYPPSKELDVKLRDEAARRRKALSGKNNAVDGTKRVRTRERGCAIPAPEANAEIQTNLDRMRVVTRANAKSKSEKFPPPHQDGAVGYPLDASNKGAVSFGATETSFSSTISNSKPSGSVGSYASSSYRGWKTNKAGSHSAPSWKLMRAFKPSTVGLSFNLLFRRK* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0478 548 Pfam Protein kinase domain 86 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0478 548 SMART serkin_6 86 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0478 548 MobiDBLite consensus disorder prediction 1 45 - -
Lja4g0478 548 CDD STKc_CDK9_like 86 370 - -
Lja4g0478 548 Gene3D Transferase(Phosphotransferase) domain 1 169 409 - -
Lja4g0478 548 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 57 525 - -
Lja4g0478 548 ProSiteProfiles Protein kinase domain profile. 86 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0478 548 SUPERFAMILY Protein kinase-like (PK-like) 79 375 IPR011009 -
Lja4g0478 548 Gene3D Phosphorylase Kinase; domain 1 72 168 - -
Lja4g0478 548 MobiDBLite consensus disorder prediction 488 508 - -
Lja4g0478 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Lja4g0478 548 PANTHER CELL DIVISION PROTEIN KINASE 57 525 - -
Lja4g0478 548 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0478 Lja-Chr4 3908435 3913069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0478 78 404 Core Cell Cycle Gene Families AT5G10270 52.000 2.75e-119 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lja4g0478 Pkinase 1.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0478 K08819 - gmx:100789359 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0478 4 3908435 3913069 Lja4g0478 4 3908435 3913069 ECH