Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0476 ATGGAAAAGCTGAATTTTGTTAAGAATGGAGTGAGCAGATTGCCTCCTGGTTTTCGTTTCCAGCCAACAGATGAAGAGCTTGTGTTTCAGTACTTGAAATGTAAAGTGTTCTCATTCCCATTGCCTGCTTCCATCATTCCTCAGATCAATGTCTGCAGCTATGATCCTTGGGATTTGCCAGGAAATTGTGATTATGAGCAAGAGAGGTACTTTTTCAGCTCCAAGGAATCTAAGTATCGAAATGGCAATCGAATGAACAGAAAAACCAATTGTGGCTATTGGAAGGCAACTGGGTCAGACAAAAAGATATCTTCTTCAACAAGTAATGATGGCATTATGGGGATAAGAAAAACCCTGGTTTTTTACCAAGGCAAGTCACCAAATGGCTCCAAAACTGATTGGGTTTTGCATGAATATCGTCTTATCGGTGTAGAAACTAGTGCTTGCAACTCAACCCAAAACTTAAACGAGATAGGAGATTGGGTTCTGTGTCGTGTATTGATGAAGAAAAGAAGTAGAGAAAGTGATGGCGGCACCACTCATAACATGAATATGCAAAATCCAAGATTGTTTGATTTTATGATGGTGAGCAATAGGAGTAATTCTTCTTCATCCTCATCGTGTTCAAGTTCCAGTAATTATAACTTCATGGAGGTCTCTTCAAATGCACCTGACCAAGAAGGAACAAGTGGCTATGCTGATTTTTAA 708 0.3955 MEKLNFVKNGVSRLPPGFRFQPTDEELVFQYLKCKVFSFPLPASIIPQINVCSYDPWDLPGNCDYEQERYFFSSKESKYRNGNRMNRKTNCGYWKATGSDKKISSSTSNDGIMGIRKTLVFYQGKSPNGSKTDWVLHEYRLIGVETSACNSTQNLNEIGDWVLCRVLMKKRSRESDGGTTHNMNMQNPRLFDFMMVSNRSNSSSSSSCSSSSNYNFMEVSSNAPDQEGTSGYADF* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0476 235 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 235 - -
Lja4g0476 235 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Lja4g0476 235 Gene3D NAC domain 23 174 IPR036093 GO:0003677|GO:0006355
Lja4g0476 235 SUPERFAMILY NAC domain 10 169 IPR036093 GO:0003677|GO:0006355
Lja4g0476 235 ProSiteProfiles NAC domain profile. 14 169 IPR003441 GO:0003677|GO:0006355
Lja4g0476 235 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0476 Lja-Chr4 3900860 3902745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0476 1 172 NAC Transcription Factor Family AT5G13180 62.209 1.22e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja4g0476 NAM 3.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0476 - - gmx:100803200 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0476 4 3900860 3902745 Lja4g0476 4 3900860 3902745 ECH