Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0462 ATGGAGGAACATATAGTGTTATTCCCTATCTCATCGGCTTCTCCATCTGATTTTAAAGCTGGTCATAGCTCTAATGATAATATTAAAGGAAGATCTGACAAAAAAATCACACAACACAAGTATGTGTTCCAAACAAGGAGTCCGATTGATATACTGGACGATGGGTACCGATGGAGAAAGTATGGTAAAAAATCGGTGAAAAACAAAAAATTTCCTAGACATTACTATAGGTGCACTTATCGCGGATGTAATGTGAAGAAACAAATCCAACGCTGCTCAGAAGATGAGCAGATTGTGGTGTCAACCTACGAAGGGATGCATATTCACCCTGTCGAGAAGTCAGCTGAAAGCTTTGAGCAAATCTTGCAAAACTATCACATATACAACCAATTGTGTAATGATACTCCATTGTAG 414 0.3841 MEEHIVLFPISSASPSDFKAGHSSNDNIKGRSDKKITQHKYVFQTRSPIDILDDGYRWRKYGKKSVKNKKFPRHYYRCTYRGCNVKKQIQRCSEDEQIVVSTYEGMHIHPVEKSAESFEQILQNYHIYNQLCNDTPL* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0462 137 SMART WRKY_cls 52 111 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g0462 137 Gene3D WRKY domain 36 112 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g0462 137 Pfam WRKY DNA -binding domain 53 109 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g0462 137 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 128 IPR044810 GO:0003700
Lja4g0462 137 ProSiteProfiles WRKY domain profile. 47 112 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g0462 137 PANTHER WRKY FAMILY TRANSCRIPTION FACTOR 1 128 - -
Lja4g0462 137 SUPERFAMILY WRKY DNA-binding domain 44 111 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0462 Lja-Chr4 3741813 3742519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0462 40 131 WRKY Transcription Factor Family AT5G13080 67.391 1.36e-45 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja4g0462 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0462 - - gmx:100127378 194.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0462 4 3741813 3742519 Lja4g0462 4 3741813 3742519 ECH