Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0459 ATGGAATGGAATTTGAAAGCAAGTTCTTGGGATTTGAGTGAAGTGGATCAAGCAGCAACCATACCCAACATAGAAACAGTGGATCATGGTTCAATTAACAGATTTGGAGTTTACAGAACAAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCAATTGGGGAATTCTAGCAATGAATTGGTGGCTGCCAAGTCCAAATTAGATGTTGCTGCTGGTGGTGTCTCCAAAATGACTACTACTACACCTTCTTCATCATCTTCAGGATCATCTAAGAGAGCTAGAGCCATTAACAATGGGACTCAGAGAGTGTCATGTCTTGTGGATGGATGCCAATCAGATCTTAGTAACTGCAGGGACTATCACCGGCGCCATAAGGTCTGTGAGCTCCATTCCAAGAGTGCTCAGGTCACAATTGGTGGCCACAAGCAAAGATTCTGCCAACAGTGTAGCAGGTTCCATTCACTGGAGGAATTTGATGAAGGAAAAAGAAGCTGCAGGAAGCGCTTAGATGGTCACAATCGACGGAGGAGAAAGCCCCAACCAGAACCACTCACGAGATCTTGTGATTTTTTGTCCAATTACCAAGGCACCCAGCTGCTGCCCTTCTCAAGTCCACATGTATACCCTTCCACTGCTGTGGTGAACCCTGCTTGGGCTGGAGTTGTTACTTCCGCTGCAGATGTTAGGCTCCACAGCCACAACCAACACCAGCAACAAATCCACATGGTTGATAAACAGGACCTTTTTCTTGGATCTTCTCCATCCAGCTATAAAGAAGGGAAGCAAGTGGCATTCATGCCAGGTGACCAAAACCCACATCTTCCAGCTGCTTCCATAGGCCATAAGTTTGGCAGGCCTAGCCCTTTTGCAGAAAGTGATGGGCTGAGATGCAAAAACATGTTCTGTGATAGCCTAACAAGTTCAGTCCAAGAGTCCTCTTGTGCTCTCTCTCTTCTGTCATCACCACAGGCACACAACACTGCAGGAAATGGGTTTAACCAAATGGTGAACCCTCACTCATCCCTTATGCAGCCCTTGGGCCTGAGCCTGCATGATAACAGCATGGGGCCCGTGTACTCAGGTTGTGATGACCATTGTTCATCAATGTATAACGTGGGTTCTAGTGGGTCCCAGGGGAATGAAGCCCCTTCAATGTTCCCCTTTCAATGGGAATAG 1176 0.4702 MEWNLKASSWDLSEVDQAATIPNIETVDHGSINRFGVYRTKGEFSVDLKLGQLGNSSNELVAAKSKLDVAAGGVSKMTTTTPSSSSSGSSKRARAINNGTQRVSCLVDGCQSDLSNCRDYHRRHKVCELHSKSAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPEPLTRSCDFLSNYQGTQLLPFSSPHVYPSTAVVNPAWAGVVTSAADVRLHSHNQHQQQIHMVDKQDLFLGSSPSSYKEGKQVAFMPGDQNPHLPAASIGHKFGRPSPFAESDGLRCKNMFCDSLTSSVQESSCALSLLSSPQAHNTAGNGFNQMVNPHSSLMQPLGLSLHDNSMGPVYSGCDDHCSSMYNVGSSGSQGNEAPSMFPFQWE* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0459 391 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 6 391 IPR044817 GO:0003677
Lja4g0459 391 Pfam SBP domain 105 178 IPR004333 GO:0003677
Lja4g0459 391 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 6 391 - -
Lja4g0459 391 Gene3D - 96 166 IPR036893 GO:0003677|GO:0005634
Lja4g0459 391 ProSiteProfiles Zinc finger SBP-type profile. 102 179 IPR004333 GO:0003677
Lja4g0459 391 MobiDBLite consensus disorder prediction 74 94 - -
Lja4g0459 391 SUPERFAMILY SBT domain 103 184 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0459 Lja-Chr4 3708260 3712362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0459 1 391 SBP-box Gene Family AT5G50670 42.569 1.81e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja4g0459 SBP 4.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0459 - - gmx:100806507 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0459 4 3708260 3712362 Lja4g0459 4 3708260 3712362 ECH
Lja4g0459 4 3708260 3712362 Lja1g4326 1 55809998 55813611 PCT