Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0450 ATGCCTCAGGGAACTCTTGAAGTTCTTCTAATCAGTGCCAAGGGCCTTGAGAATACTGATTATCTTTGTAACATGGACCCTTATGTGATCCTAACATGCCGCACTCAGCAGCAACAAAGCAGTATTGCATCAGGTAAAGGAAGTGATCCAGAGTGGAATGAGAGTTTTGTATTCAACCTGTCTCATGGCGTTTCTGAACTCAAATTGAAGATCATGGACAGTGATACCGGAACCGGTCATGATTTCGTAGGAGAAGCTACCATTCCATTGGATGCATTGTTTACTGACGGGAACATCCCAGCCATGTCCTACAATGTCGTCAAGGATGAACACTACTGTGGAGAAATTAGAATTGGCCTCACTTTTACGCCTGAGGCTCGCGACGAGCGGCAAGAGCGAAGTTTCGGTGGGTGGAAGGAGTCTGGTTACTGA 432 0.463 MPQGTLEVLLISAKGLENTDYLCNMDPYVILTCRTQQQQSSIASGKGSDPEWNESFVFNLSHGVSELKLKIMDSDTGTGHDFVGEATIPLDALFTDGNIPAMSYNVVKDEHYCGEIRIGLTFTPEARDERQERSFGGWKESGY* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0450 143 Gene3D C2 domain 2 125 IPR035892 -
Lja4g0450 143 PANTHER C2 DOMAIN-CONTAINING 1 141 - -
Lja4g0450 143 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 125 IPR035892 -
Lja4g0450 143 SMART C2_3c 5 102 IPR000008 -
Lja4g0450 143 Pfam C2 domain 4 97 IPR000008 -
Lja4g0450 143 PANTHER OS02G0640000 PROTEIN 1 141 - -
Lja4g0450 143 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0450 Lja-Chr4 3670682 3671900 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0450 4 119 C2H2 Transcription Factor Family AT4G21160 31.034 1.03e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0450 - - lja:Lj0g3v0097079.1 247.669