Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0445 ATGTGGGGGTGGATGATATGGCAACGGCGAAAGCCCTCGCCGGAGCTCTTATCTTTGTGCAACAGCCTCAGAACCGCTGTTCGCAACATGGGTGGCGGTCCTCGAACGTTTCCCGGCGGCGTAAGCAAGTGGAAATGGAAGCGCATGCACGAGAAGCGCGCCAGAGACAAAGAGAGAAGACTCCTCGAACAAGAGAAGCATCTCTACCACGCTCGCATCCGCTCAGAAATCCGCTCCTCCATCGCCCCCTCTTCTTCCTCTTCCTCCGCCACCCACCAGCCTGTTTCCCCCACCCAACATGTCAAAGCCCTCGCCGATCGTTTCATGAAAGAAGGCGCACTAGACCTCTGGAACCACCAGGATGGTCCCTTAACCCAAACCCAAGCTCAAATCCAAACCCAACCCCAACCCCAACCCCAGAACCTAGCACCAGTTGATTTGCGCAAACTCATACCCCAACATTCGAATCAGAATTTGGCGAGTTTTTCGCAGGCTAGGGAATACCGGGCTGTTCCTGAGGTTAGAAATTCGGATGCCAGCGCGGGCAAGCGTAGAATTTGGAGGAGGGACCCTAGTGATAGTTCTTGTAGTGAGGGTGAGGGTGAAATGGAATCGAAGAGTCACGGTTCGAAGATGGGTGGGGTTAGTATTGCTTCTTTGGGGAAGTATGATGTGAAGAAGGAGAGGAGGGTGATGCCGAAGTCATATGATGAGGGAAGTGATTTTTCAGAGCAGGTTGAGCTGATCAAGTATGAAATTAATAAGAGGAAGTTGAGCCAGAATGAGGGTCAGGAACAACAAGACGACATTCTAACTCAGAAAAGATTTGATGAGAGTGGTATATCGCCATTGACTATCAAGGCACTTTCTTCGGCTGGTTATATTCATATGACTCGGGTACAAGAGGCTAGCCTCCCTGTTTGCCTTCAGGGTATAGATGTTTTGGTCAAAGCTAAAACTGGCACTGGAAAAAGTGCTGCTTTTTTGCTTCCTGCTATTGAAACAGTTCTGAAAGCTATGAGTACCAATACCTCTCAACGTGTGTCTCCGATACTTGTTCTTATTCTCTGCCCTACCAGAGAACTTGCTAGTCAAATTGCTGCCGAAGCAAAGGTTTTGCTGAAACATCATGAAGGTATTGGGGTGCAGAGTCTTGTTGGAGGTGTACGATTTAAGCTTGACCAAAAACGCCTTGATTCAGATCCATGCCAGATTCTTGTTGCTACACCTGGAAGGTTGCTGGACCATGTTGAGAATAAATCGGGAATATCTGTACGATTAATGGGCTTGCAGATGCTCGTACTTGATGAGGCTGATCATTTATTGGACCTGGGATTTCGAAAGGATATAGAAAAAATTGTTGATTGTTTGCCCCGTCAAAGGCAATCCATGCTGTTTTCTGCAACCATCCCAAAGGAGGTCCGTCGGATATCTCAACTTGTTTTAAAAAGGGAACACCAATATATTGATACAGTTGGAATGGGTTCTGTGGAAACTCCAGTTCAGATAAAACAATCTTTTCTTATCGCTCCACATGAATCACATTTTCAAATAGTACACCATATTCTGAAGGAGCATATTTTGCAAACACCTGATTATAAGGTTATTGTTTTTTGTACATGTGGGATGGTGACATCTCTCATGTATCAAGTTCTTCGGGAAATGAAATTGAAAGTTAAGGAGATACATTCTCGAAAACCTCAGCTCTACCGTACTCGCGTTTCAGATGAATTTAAGGAATCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCACGTGGAATGAATTATCCTGATGTTACTTTAGTCTTGCAGGTGGGAATTCCTCCAGACCGTGAACAATACATACACCGTCTTGGAAGAACAGGGCGGGAAGGCAAAGAAGGGGAAGGCATATTGTTGATTGCTCCATGGGAAGAATATTTTTTAGATGAAATCAAGGATCTCCCTCTAAAGAAAATCCCCTTACCAGATATAGATCCACAGGCAAAGCTCAAGATTGAGCATTCAATGGAAAAGATTGATGATGATATTAAAGAAGCAGCATATCATGGTTGGCTTGGTTATTATAACTCCATCAGGGAAATCGGGAGGGAGAAGACAACTATTGCTGACCTGGCGAACCGATTTTCAGAATCAATTGGTTTACAGAGACCTCCTGCTCTCTTCCGAAAAACTGCACTTAAAATGGGTTTGAAGGACATTCCTGGCATTAGAATTCGTAGATAG 2232 0.4498 MWGWMIWQRRKPSPELLSLCNSLRTAVRNMGGGPRTFPGGVSKWKWKRMHEKRARDKERRLLEQEKHLYHARIRSEIRSSIAPSSSSSSATHQPVSPTQHVKALADRFMKEGALDLWNHQDGPLTQTQAQIQTQPQPQPQNLAPVDLRKLIPQHSNQNLASFSQAREYRAVPEVRNSDASAGKRRIWRRDPSDSSCSEGEGEMESKSHGSKMGGVSIASLGKYDVKKERRVMPKSYDEGSDFSEQVELIKYEINKRKLSQNEGQEQQDDILTQKRFDESGISPLTIKALSSAGYIHMTRVQEASLPVCLQGIDVLVKAKTGTGKSAAFLLPAIETVLKAMSTNTSQRVSPILVLILCPTRELASQIAAEAKVLLKHHEGIGVQSLVGGVRFKLDQKRLDSDPCQILVATPGRLLDHVENKSGISVRLMGLQMLVLDEADHLLDLGFRKDIEKIVDCLPRQRQSMLFSATIPKEVRRISQLVLKREHQYIDTVGMGSVETPVQIKQSFLIAPHESHFQIVHHILKEHILQTPDYKVIVFCTCGMVTSLMYQVLREMKLKVKEIHSRKPQLYRTRVSDEFKESKQLILVSSDVSSRGMNYPDVTLVLQVGIPPDREQYIHRLGRTGREGKEGEGILLIAPWEEYFLDEIKDLPLKKIPLPDIDPQAKLKIEHSMEKIDDDIKEAAYHGWLGYYNSIREIGREKTTIADLANRFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0445 743 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 305 488 IPR014001 -
Lja4g0445 743 MobiDBLite consensus disorder prediction 172 215 - -
Lja4g0445 743 Gene3D - 241 489 IPR027417 -
Lja4g0445 743 Gene3D - 498 722 IPR027417 -
Lja4g0445 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 644 IPR027417 -
Lja4g0445 743 Pfam DEAD/DEAH box helicase 298 476 IPR011545 GO:0003676|GO:0005524
Lja4g0445 743 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 522 668 IPR001650 -
Lja4g0445 743 CDD DEADc_MSS116 281 490 - -
Lja4g0445 743 SMART ultradead3 293 504 IPR014001 -
Lja4g0445 743 MobiDBLite consensus disorder prediction 79 98 - -
Lja4g0445 743 CDD SF2_C_DEAD 503 636 - -
Lja4g0445 743 SMART helicmild6 546 627 IPR001650 -
Lja4g0445 743 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 33 121 - -
Lja4g0445 743 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 247 742 - -
Lja4g0445 743 PANTHER RNA HELICASE 33 121 - -
Lja4g0445 743 PANTHER RNA HELICASE 247 742 - -
Lja4g0445 743 Pfam Helicase conserved C-terminal domain 521 626 IPR001650 -
Lja4g0445 743 MobiDBLite consensus disorder prediction 178 207 - -
Lja4g0445 743 MobiDBLite consensus disorder prediction 79 101 - -
Lja4g0445 743 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 274 302 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0445 Lja-Chr4 3642506 3646730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0445 265 653 Eukaryotic Initiation Factors Gene Family AT3G19760 26.601 2.92e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0445 - - lja:Lj4g3v2917670.1 1206.05