Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0438 ATGGAGTCATGCACTTCATTGTTGTTTCTGGGCTTGGTTTCCATGCTCTCTTTTGTGGCTTCTAATAAGGTGGTCTCAAATGAAGTTGCGGCGCTGACAACATTCAAAGAAGCTGTGTATGAAGATCCACATCTGGTTTTGTCCAATTGGAATACTCTGGATTCAGATCCTTGTGACTGGAATGGCGTTTCATGCACGGCGACTCGAGATCATGTCATCAAGCTAAATATATCAGGGGCATTATTAAGGGGGTTTCTTACTCCAGAATTCGGGAAAATCACCTACTTGCAAGAATTGATCTTGCATGGAAATAATCTCATTGGAATAATACCTAAAGAATTGGGAATGTTGACATCTCTTAAGGTGTTGGATTTGGGAAAGAATCAGTTATCAGGACCAATTCCTCCAGAGCTTGGAAACTTGACCCAACTTGTAAAAATAAACTTGCAGTCCAACGGGTTGACTGGTAGGCTACCTCCAGCGCTAGGAAATTTGAAATACCTTCAAGAACTTCGGCTAGATAGGAATAAACTTCAAGGACCTGTTCCTGCTGGTGGCAGTTCAAACTTTGCCTCAAACATGCATGGAATGTATGCCTCAAATGCAAATTTTACTGGCTTCTGTCGTTCTTCTCAGCTAAAAGTTGCAGATTTTTCATATAACTTTTTTGTTGGTAGCATACCCAAATGTTTGGAGTATCTTCCAAGATCAAGCTTTCATGGGAATTGTCTCCATCTCAAAGACATAAAACAGCGGACTTCTGTACAATGCGCTGGTGCTTCACCAGCAGAGAGCCATCCGGTAGTGAAACCAAAGCACCATCATGTTGCTGAACATGTATCCAAGCATCAAGGAACATCAAAACCTGCTTGGCTTTTGGCTCTAGAAATAGCGACGGGAACCATGGTTGGTTCTCTCTTTCTGATTGCTATTGTCACTGCTTTCCAGAGGTGTAACAAAAAATCATCTATCATCATTCCTTGGAAGAAATCTTCAAGCGACAAAGAGAACATGGCAATATATATAGACTCAGAGATGTTGAAGGATGTGATGAGGTATAGCAGACAGGAGCTGGAAGTGGCTTGTGAGGACTTCAGCAACATAATTGGGTCCTCACCAGATAGTGTGGTCTACAAGGGTACAATGAAAGGTGGGCCTGAAATTGCTGTAATTTCACTCTGCATCAAGGAAGAGAATTGGACAGGACACCATGAGCTCTATTTTCAGAGAGAGGTGGTAGATTTGGCAAGGTTAAATCATGATAATACAGGGAAGCTACTAGGCTATTGTAGAGAGAGCACTCCATTTACAAGGATGTTGGTTTTTGACTATGCATCAAATGGGACACTTTATGAGCACCTACATTGTTATGGAGAAGGGTGCCAGTTCTCATGGACACGGCGAATGAAAATTATCATAGGCATTGCACGCGGGCTCAAGTATCTGCACAATGAAGTTGAACCCCCATTCACTATCTCAGAGTTGAACTCCAACTCTATATACCTTACAGAAGACTTTTCCCCTAAGCTGGTTGATTTTGAAAGTTGGAAGTCAATTCTTGAAAGATCAGAAAAAAATTCTGGTTCTATTAGCAGCCAAGGTGCTGGAAACTCACTTGAAGCACGCCATCTTGATACCAAAGGAAACGTTTATGCTTTTGCAGTACTTCTACTAGAGATAATCAGTGGGAGACCTCCTTACTGCAAGGACAAAGGGTACTTGGTGGACTGGGCTAGAGAGTATCTTGAAGTGCCAGATGTAATGTCAAATGTGGTGGATCCTGAGTTGAAGCATTTTAGAGATGAGGAGCTGAAAGTAATATGTGAGGTAGTATCTCTTTGTATCAATGCTGATCCCACTGCACGTCCATCAATGAGAGAATTGTGCAGCATGCTTGAGACAAGAATTGACACATCTATAAGCGTGGATCTCAAGGCATCATCTTTGGCTTGGGCTGAACTAGCACTTTCATCATAA 1977 0.4208 MESCTSLLFLGLVSMLSFVASNKVVSNEVAALTTFKEAVYEDPHLVLSNWNTLDSDPCDWNGVSCTATRDHVIKLNISGALLRGFLTPEFGKITYLQELILHGNNLIGIIPKELGMLTSLKVLDLGKNQLSGPIPPELGNLTQLVKINLQSNGLTGRLPPALGNLKYLQELRLDRNKLQGPVPAGGSSNFASNMHGMYASNANFTGFCRSSQLKVADFSYNFFVGSIPKCLEYLPRSSFHGNCLHLKDIKQRTSVQCAGASPAESHPVVKPKHHHVAEHVSKHQGTSKPAWLLALEIATGTMVGSLFLIAIVTAFQRCNKKSSIIIPWKKSSSDKENMAIYIDSEMLKDVMRYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEENWTGHHELYFQREVVDLARLNHDNTGKLLGYCRESTPFTRMLVFDYASNGTLYEHLHCYGEGCQFSWTRRMKIIIGIARGLKYLHNEVEPPFTISELNSNSIYLTEDFSPKLVDFESWKSILERSEKNSGSISSQGAGNSLEARHLDTKGNVYAFAVLLLEIISGRPPYCKDKGYLVDWAREYLEVPDVMSNVVDPELKHFRDEELKVICEVVSLCINADPTARPSMRELCSMLETRIDTSISVDLKASSLAWAELALSS* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0438 658 Gene3D Ribonuclease Inhibitor 27 140 IPR032675 -
Lja4g0438 658 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 658 - -
Lja4g0438 658 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Lja4g0438 658 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Lja4g0438 658 SUPERFAMILY L domain-like 27 235 - -
Lja4g0438 658 ProSiteProfiles Protein kinase domain profile. 363 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0438 658 Pfam Protein tyrosine and serine/threonine kinase 366 632 IPR001245 GO:0004672|GO:0006468
Lja4g0438 658 Gene3D Ribonuclease Inhibitor 141 262 IPR032675 -
Lja4g0438 658 PANTHER PROTEIN MALE DISCOVERER 2 7 658 - -
Lja4g0438 658 Gene3D Transferase(Phosphotransferase) domain 1 445 647 - -
Lja4g0438 658 Gene3D Phosphorylase Kinase; domain 1 336 444 - -
Lja4g0438 658 SUPERFAMILY Protein kinase-like (PK-like) 342 633 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0438 Lja-Chr4 3559578 3564082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0438 1 638 Receptor kinase-like Gene Family AT2G35620 28.875 2.65e-56 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Lja4g0438 PK_Tyr_Ser-Thr 2.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0438 - - lja:Lj4g3v2951110.3 1091.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0438 4 3559578 3564082 Lja4g0438 4 3559578 3564082 ECH