Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0428 ATGGATGGGAGAGAAGCTATGGCATTTTCTGGTGGCTCTGCATATTTCATGCATAGAGGAGGGGTCCCAGGGTCTGGCTCTGGGACTCAGGTAGGAGGAGGAGGAGGTGGGGGGTTTCAAGGACCCCCTGGATTCAGAGCGTTGTCGTCGAACCCTGGCATTCAAGCTCAGTCAAATGCCAGGGTTCAGGGTGGCTCTGTTGGTCCTAGTCCAACATTTTCAGTGGAGCCTCAGGTTCGTGCCGATTTTAATCGCGGCAGTATCATTGGTGCCTCTTCTGGGACACCTTCGAGTGAGCCTGTGAAAAAGAAAAGAGGGAGACCTCGTAAATACGGTCCTGATGGACCAGGACCAGTTTCTTTGAAACTGTCTCCAATGTCTGCCCCTGCTAATCCTAACCAGGGTTCGACCACATCGTCTGAGAAACGCGGTAGAGGCCGCCCACCTGGATCTGGAAGGAAGCAACAGCTAGCCCTTTTAGGTGATTGGATGAATAGTTCAGCAGGGGTGGCTTTTTCTCCACATGTTATCACCATTGCTGTTGGGGAGGACATTGTAGCGAAGTTATTGTCATTATCACAGCAGAGACCAAGGGCACTTTGCATCTTATCGGGCACTGGAACAGTTTCTTCAGTTACTCTCCGACAGCCTGCTTCCACCAATACCAGTGTAACTTTTGAGGGGCGATTCCAAATATTATGCTTGTCTGGTTCTTACTTGGTGTCTGAAGATGGAGGACCCTCAAATAGAACAGGTGGCATAAGTGTTTCTCTTTCTAGCCCTGAAGGTCATGTTATTGGTGGTGGTGCTGCTACGCTTATTGCTGGAAGTCCAGTGCAGGTGGTATTGGGCAGTTTTGTGTATGGTGGTGGCTCTAAGACAAAGACCAAGCAAGAGGCCACTGACAGAGATGAAAGTTCTGAGCCTCTTCAGCACAGTGACAAGTTACCTTCTCCAGCCAGTGCCCCACCTAGTCAAAACTACATCTCCCCTGCAACCGGCATTTGGCCTGGATCGCGACCACCGGACCTGAAAAGCGTGCATGCACACACTGGCATCGACTTGACACGTGGCTGA 1077 0.5097 MDGREAMAFSGGSAYFMHRGGVPGSGSGTQVGGGGGGGFQGPPGFRALSSNPGIQAQSNARVQGGSVGPSPTFSVEPQVRADFNRGSIIGASSGTPSSEPVKKKRGRPRKYGPDGPGPVSLKLSPMSAPANPNQGSTTSSEKRGRGRPPGSGRKQQLALLGDWMNSSAGVAFSPHVITIAVGEDIVAKLLSLSQQRPRALCILSGTGTVSSVTLRQPASTNTSVTFEGRFQILCLSGSYLVSEDGGPSNRTGGISVSLSSPEGHVIGGGAATLIAGSPVQVVLGSFVYGGGSKTKTKQEATDRDESSEPLQHSDKLPSPASAPPSQNYISPATGIWPGSRPPDLKSVHAHTGIDLTRG* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0428 358 CDD DUF296 174 286 IPR005175 -
Lja4g0428 358 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 358 - -
Lja4g0428 358 MobiDBLite consensus disorder prediction 50 73 - -
Lja4g0428 358 MobiDBLite consensus disorder prediction 21 154 - -
Lja4g0428 358 Pfam Plants and Prokaryotes Conserved (PCC) domain 174 287 IPR005175 -
Lja4g0428 358 MobiDBLite consensus disorder prediction 126 144 - -
Lja4g0428 358 MobiDBLite consensus disorder prediction 296 311 - -
Lja4g0428 358 SUPERFAMILY AF0104/ALDC/Ptd012-like 171 290 - -
Lja4g0428 358 SMART AT_hook_2 102 114 IPR017956 GO:0003677
Lja4g0428 358 SMART AT_hook_2 142 154 IPR017956 GO:0003677
Lja4g0428 358 Gene3D - 174 305 - -
Lja4g0428 358 MobiDBLite consensus disorder prediction 292 358 - -
Lja4g0428 358 ProSiteProfiles PPC domain profile profile. 166 309 IPR005175 -
Lja4g0428 358 MobiDBLite consensus disorder prediction 312 333 - -
Lja4g0428 358 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 358 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0428 Lja-Chr4 3497463 3500947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0428 1 358 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 48.731 8.18e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0428 - - gmx:100813888 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0428 4 3497463 3500947 Lja4g0428 4 3497463 3500947 ECH