Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0427 ATGGGTTGTGAATTCTCTAAATGCTGCTGGGGTGCAGAACAAGGGGATCCTGTTCCTGAGCCTCAAGTTGATGAAACTGAAGAAAATGTTGAGGGCAATGGGTTGTCGTCGTTTCATGAATATACAATTGATCAGCTTAAGAATGCTACCTCTGGATTTTCAGTTGAAAATATAGTTTCTGAGCATGGAGAAAAGGCTCCTAATGTTGTATATAAAGGGAAACTTGAAAATCAAATGAGAATTGCAGTCAAACGGTTCAACAAATCAGCCTGGCCTGACGCCCAACAATTTTTGGGAGAGGCCAAAGCTGTTGGTCAGCTAAGGAACCCAAGATTGGCAAATCTGCTTGGATGTTGCTGTGAAGGTGATGAGAGGCTACTTGTATCGGAATATATGCCCAATGATACTTTGGCAAAGCACTTGTTCCATTGGGAAACTCAGCCCATGAAATGGGCAATGCGACTGAGAGTTGCTTTGCACCTAGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCACTATATCACGATTTAAATGCTTACAGAGTTCTTTTTGATGATGACTACAATCCTAAACTTTCATGCTTTGGTCTGATGAAAAACAGTCGAGATGGGAAAAGTTATAGTACGAACTTGGCATTTACTCCGCCTGAGTATCTGAGGACAGGTAGAGTTACTCCAGAGAGTGTAACTTATAGTTTTGGGACCCTTTTGCTTGACCTTCTTAGTGGGAAACATATTCCTCCAAGCCATGCGCTTGACCTGATTAGGGACAGGAACCTTCAGATGCTAACAGACTCATGTTTAGAAGGACAATTTTCAGATGATGAGGGGACTGAATTAGTTCGTCTAGCCTCACGATGCTTACAATCTGAACCGCGAGAGCGTCCTAATCCTAAGTCCTTGGCAACTGCTCTTATACCCCTACAGAAGGATTCTGAGGTCCCTTCTAATGTGCTGATGGGTATACCAGAGGGCCCTGCATCTTTTCCCCTTTCGCCACTCGGGGAAGCTTGTCTACGAATGGATCTGACTTCCCTGCATGAGGTGCTGGAGAAAATTGGGTACAAAGATGATGAAGGCTCAGCAACAGAGCTTTCATTCCAAATGTGGACCAACCAGATGCAGGAAACATTGAACTCGAAGAAGAAGGGAGATGCTGCTTTTCGGCATAAGGACTTTAAAACTGCAATTGATAGCTATACACATTTCATTGAAGTTGGAACCATGGTTTCTCCGACCATGTACGCTCGTCGAAGTCTGTCCTATCTCATTAACAATATGCCAAATGAAGCACTAAATGATGCATTGCAGGTACAGATAATAACACCTGTTTGGTACATTGCATATTATTTACAAGCTGTTGCTCTTTTAGCATTGGGCAAGGAGAATGAGGCACAAGTGGCACTTAAAGAGGGTTCTTCACTTGAGACTAAAAAGAACACAAACTAG 1455 0.433 MGCEFSKCCWGAEQGDPVPEPQVDETEENVEGNGLSSFHEYTIDQLKNATSGFSVENIVSEHGEKAPNVVYKGKLENQMRIAVKRFNKSAWPDAQQFLGEAKAVGQLRNPRLANLLGCCCEGDERLLVSEYMPNDTLAKHLFHWETQPMKWAMRLRVALHLAQALEYCTSKGRALYHDLNAYRVLFDDDYNPKLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVTYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGQFSDDEGTELVRLASRCLQSEPRERPNPKSLATALIPLQKDSEVPSNVLMGIPEGPASFPLSPLGEACLRMDLTSLHEVLEKIGYKDDEGSATELSFQMWTNQMQETLNSKKKGDAAFRHKDFKTAIDSYTHFIEVGTMVSPTMYARRSLSYLINNMPNEALNDALQVQIITPVWYIAYYLQAVALLALGKENEAQVALKEGSSLETKKNTN* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0427 484 Pfam Protein tyrosine and serine/threonine kinase 69 305 IPR001245 GO:0004672|GO:0006468
Lja4g0427 484 SUPERFAMILY TPR-like 383 477 IPR011990 GO:0005515
Lja4g0427 484 Gene3D Tetratricopeptide repeat domain 377 484 IPR011990 GO:0005515
Lja4g0427 484 SUPERFAMILY Protein kinase-like (PK-like) 34 314 IPR011009 -
Lja4g0427 484 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 484 IPR045845 GO:0004672|GO:0009742
Lja4g0427 484 PANTHER TPR DOMAIN KINASE 1 484 - -
Lja4g0427 484 ProSiteProfiles Protein kinase domain profile. 56 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0427 484 Gene3D Phosphorylase Kinase; domain 1 27 131 - -
Lja4g0427 484 Gene3D Transferase(Phosphotransferase) domain 1 133 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0427 Lja-Chr4 3487303 3492881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0427 28 320 Receptor kinase-like Gene Family AT3G58690 31.761 1.34e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Lja4g0427 PK_Tyr_Ser-Thr 8.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0427 K14500 - gmx:100819210 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0427 4 3487303 3492881 Lja4g0427 4 3487303 3492881 ECH