Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0417 ATGGTGCCTGAAAACATGAAAAAACAACTTGCTTTGGCTCTGAGAAGCATCCAGTGGAGCTATGCAATCTTCTGGTCTGATTCACCTAACCAACCCGGGGTCTTGAGCTGGGGTGAAGGGTATTACAATGGAGACATTAAGACAAGGAAGACAAGTCAAGGAGTAGAACTGAGTTCTGATCAAATAGGCTTCCACAGGAGTGAGCAACTAAGAGAGCTGTTCAAGTCCCTCAAAACTGCAGAGACCAACCCACAAACAAAAAGGCCTTCAGCTTCACTATCCCCTGAAGATCTCACTGATACAGAATGGTATTATTTGGTTTGTATGTCATTTGTATTCAACATTGGCCAAGGGTTACCAGGAAGAGTTGTAGCCAGTGGCCAACCCATTTGGATGACCAATGCTCATTCCACTGATTGCAAACTTTTTAGTCGCTGTCTGCTGGCAAAGAGTGCATCCATTCAGACAGTGGTGTGTTTTCCTTTTATGGAAGGGGTCATTGAGCTAGGCACAACAGATCATGTCTCAGAAGATCTCCATCTCATTGAACGGATCAAAACTTCTTTCTTGAACATTCTGCATGCTAATGATCCTTTAAAGTCCGGAGCCACATCAAAAGCGAGAGAGGAGGAAAGTGTTGCTTGTGTTGCAGCATTTGATCACAATGCTTACAATGCTGAATTAATTCCAGAAGTTGGGTATGGCATAATCAACACAACAACCTCTCCTGATGGAAGTTCTAATGCTTTACAAGCCAACCAACCACCAGATGAAACATTCATGGTTGATAGGATAAACCGTGGCAGCACGTCTCAATTCCAAAGCTGGCAAGTTGTTGATGATGAACTAAGCAACTGTGTCCACAACTCCGTGAATTCTAGTGACTGCATATCACAAACTTTTGCCAGCCCTGAGAAGATTGGTTCTGCTCCTAATGTTGAAAACCTTTCTGACCTTCAAAAGTGCAATAACCAAAAAATGACCTTAGTGGATCCTCTAAGTGATGATTGGCATTACCAAAAAGTTCTTTCTGCCCTTTTAAAAAACTCAGACCAGTTAAACATTGGGATGCATTTTCAGAACTTTTATCAGGAGTCAATCTTTTCCATTTGGAAGAAAGGAGGGCCTATGGATTGCCAAAGGCCAAGAGTAGGAGCCTCACAAAACTTGTTGAAGAAAGTGCTGTTTGAAGTTCCTAGGATGCACTTGGATGGATTGCTTGAGTCTCAAGAAGAGAATGACTATAAAGAGGGAACAAGACTAGAGGCTGATGAAAATGGCATGAACCATGTTTTGTCAGAAAGAAGAAGAAGAGCAAAACTAAATGAAAGGTTTTTAACACTTAGATCAATGGTCCCTTCAAATATCAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATACTTTAGAAGCCTCGAGAAAAGGATAAGAGAGTTAGAAGCTCAAAGGGACATAACTAATGTAGAAACTAGAGCTAAGAGTTCACCTCAAGATATGGTGGAGAGAACTTCTGATCATTATTCCAACAAAATTAACAATGGCAAGAAATCAGTGGTGAAAAAGAGAAAAATTTGTGACATGGAGAAGACTAATTCAGATGCTCTGAAAGTTAGTTCTACTAATGACGTTACTATCACTATGAATGATAATGATGTTGTAATTGAAATTACATGTTCTCCTAGAGCAGGAAGACTAATGGAAATTATGGAAGCACTTAACAGTCTCAATATATATTTCAAATCAGTTCAGTCAACAGAAGCTGATGGGCATCTTTATCTGACCATTAAATCTAAGTTAACAGGACCAACTAATGCAACAGCAAAAAGGATCAAACAAGCACTCCAAAAAGTGGTTTTGAAAAGTTGA 1872 0.3985 MVPENMKKQLALALRSIQWSYAIFWSDSPNQPGVLSWGEGYYNGDIKTRKTSQGVELSSDQIGFHRSEQLRELFKSLKTAETNPQTKRPSASLSPEDLTDTEWYYLVCMSFVFNIGQGLPGRVVASGQPIWMTNAHSTDCKLFSRCLLAKSASIQTVVCFPFMEGVIELGTTDHVSEDLHLIERIKTSFLNILHANDPLKSGATSKAREEESVACVAAFDHNAYNAELIPEVGYGIINTTTSPDGSSNALQANQPPDETFMVDRINRGSTSQFQSWQVVDDELSNCVHNSVNSSDCISQTFASPEKIGSAPNVENLSDLQKCNNQKMTLVDPLSDDWHYQKVLSALLKNSDQLNIGMHFQNFYQESIFSIWKKGGPMDCQRPRVGASQNLLKKVLFEVPRMHLDGLLESQEENDYKEGTRLEADENGMNHVLSERRRRAKLNERFLTLRSMVPSNIKDDKVSILDDAIEYFRSLEKRIRELEAQRDITNVETRAKSSPQDMVERTSDHYSNKINNGKKSVVKKRKICDMEKTNSDALKVSSTNDVTITMNDNDVVIEITCSPRAGRLMEIMEALNSLNIYFKSVQSTEADGHLYLTIKSKLTGPTNATAKRIKQALQKVVLKS* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0417 623 MobiDBLite consensus disorder prediction 497 511 - -
Lja4g0417 623 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 189 IPR025610 -
Lja4g0417 623 MobiDBLite consensus disorder prediction 495 514 - -
Lja4g0417 623 Coils Coil 464 491 - -
Lja4g0417 623 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 428 493 IPR036638 GO:0046983
Lja4g0417 623 SMART finulus 431 480 IPR011598 GO:0046983
Lja4g0417 623 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 425 474 IPR011598 GO:0046983
Lja4g0417 623 PANTHER TRANSCRIPTION FACTOR TT8 3 619 - -
Lja4g0417 623 PANTHER TRANSCRIPTION FACTOR EGL1 3 619 - -
Lja4g0417 623 Pfam Helix-loop-helix DNA-binding domain 429 475 IPR011598 GO:0046983
Lja4g0417 623 Gene3D - 425 497 IPR036638 GO:0046983
Lja4g0417 623 Gene3D - 102 171 IPR029016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0417 Lja-Chr4 3362250 3366586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0417 2 620 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 46.248 3.25e-173 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g0417 bHLH-MYC_N 1.7e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0417 - - lja:Lj4g3v2963430.1 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0417 4 3362250 3366586 Lja4g0417 4 3362250 3366586 ECH