Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0411 ATGTCGTCATGGTGGGGAAAGCTTTCATCCAAAGAGGGTAAGGGGAAGGCAAAGAAGGAAAGTATTTTTGATGCAATACAGCGAAAATTAAAGAATGCTTCTAAAGACAACAAAAAATCAGGAGGATCTAAGAGACATTGCAGTGACACTATCTCAGAGAAGGGATCTAGATCCATTGCACCTTCAAGTTCATCATCACCCTCGAAACAGGTCTCCCGATGTCAAAGCTTTGCAGAAATATATCATTCTCCGACTCAGCCACTCCCGTCGCCAGGCTCAAACCTTCATACTATTGATGACGATGATTCTGAAATCATTTCGACAGCTAAACTGGAAAGAGCCAGATGCTCTAAACCATCTATTTATGTATCTAGTAGGGGAGTTCCTACAAATGTGGAGGGAGATTCTAGTGTCAGCTCTATTGATGGTGGCGACTCAGCTGATTCTTATATTGTTAGTCCTCGGGCATCCAGGGGCGAAAATGGAAACAGAGCCAACATTAACAGCTGTTTCAGGGTTGCGCACAAGGACCGATCACATAATACTATCAAAAGAAGCTCAACACGATCCTCCAAGCCAGCTCATCAATCGCGCAATAATAAGCTTCTATCTGCCGCTGCAAAAGGGGTTCATTTACATCCGAAAAATCTGCAAGTAGCTCGTCCAGGAGGTTTATGCAGTGCTCCAGATAGTTCAATGTCAAATCCTTCTATAAATCCAATGAAAGCATCTGGTTCTGAGCAAGTTTTGAACTCCGAATTCTTGACAGGAAAGCCTTATCCAACAGATATAGCTTCTGGGAACTGCTATAATCTGGGTTCAGGCCATAATTCAGTTGGTGGGAATCTGTCACGACAGACATTTTGTCCACAGCACAGGTGTAGTCCTGAGTGTTCTCCAATTCCTAGTCCCGGAATGACAAGTCCGGGTCCTGGTTCCAGGATACAGAGCGGTACTGTGACCCCTCTGCATCCACAAGCTGGAGGTGCTGTTGCAGAATCGCCTACAAGACGCCCAGACAATGGGAAGCAACAAACTCATCCGTTACCACTTCCTCCGATAAGGGTTACGAATCCTTGTCCATTTTCTACAACTTGTTCTGTGCCCACAACTCCTGTCCTTCGTAGTCCTTCCAGCACAGAAAATTCAACAAGCCCATGTTCACCATGGAAAAAGGGGCAGTTGCTTGGAAGGGGAACGTACGGGCATGTATATTTTGGTTTTAACAGAGAAAACGGCGAGATGTGTGCAATGAAGGAGGTAATCCTTTATTCGGATGATGCTAGATCAAGAGAATGTGCACAGCAACTTGGCCAAGAAATTGCTATGCTGAGTCAGTTGCAGCATCCAAATATAGTCCAATATTATGGAACTGAGACGGTGGATGACAAACTTTATATATACTTGGAATATGTCTCTGGTGGGTCAATCTATAAACTGGTTCAAGAATATGGCCCATTAGGTGAAAATGCCATTCGTAATTACACTCGGCAAATTCTGTTAGGACTCGCATATTTACATGCTAAGAACACTGTTCACAGGGATATCAAAGGAGCAAACATATTGGTGGATCCTAATGGGCGGATAAAATTGGTTGATTTTGGGATGGCAAAACATATAAGCGGCCAGGCTTGCCCATTTTCTTTGAAAGGAAGTCCTTATTGGATGGCACCTGAGGTTATAAACAATTCAAATGGTTGTAATCAAGCTGTTGATATATGGAGTCTGGGATGTACTGTTTTGGAGATGGCAACGTCAAAACCTCCCTGGAGCCAGTATGAAGGGGTTGCTGCTATGTTTAAGATTGGGAACACCAAGGAACTTCCTACTATTCCAGAACATCTATCAGAAGAGGGAAAAGATTTTGTCAGGCTTTGTTTGCAAAGGAATCCACAAAAACGTCCCTCAGCTGTTCAACTTCTTGAGCATCCATTTGTTAAAAACGCTGTGTCGGAAAGAAACGTTGTGCCCGCTGATCCTTCAGAAGCGCCACCTGCTGTTATAAATGCCCTGAGATCTCTGGCCATTGGACCGGGCAAACATAAATCTAGAAGCTCAAGAGCTGGTCCTGGATCAAGGGATGCACACTCATCAAGGAACATGTCATGCCCCGCTTCACCCCCTGGGAACCTTATTTTGCCTTCAAGGCTAACCCATGCGAGTGGAAGGACGCCTCCCTCTCCATTATCAAGCCCTCATACTGCATCTGGCTCATCTACACCAATCACCAGTGGTGGCGGTGCTATCCCATTAAATCACACAAAGCAACCAAAACATGAAGCTAAGGGTATGTTCCAACAGTCCCAGAATTCAAATAGAAACACTGCTCACCAGAAGTCAAAGAATGGCCAGTTTGGGAGAAATGTGCAAATTAAACAAGCTTGCAGGGATGTAAGTTCATCTGATAATGCCATTCTTGCAAAAAATAATAGGAGGGTCTCTAGAGAAGTTCGTGATGGGAAATCTGATTTGGATGATTGTTTGTCGCAACAGCTGTCTAAGGATCATGTACGGGTGAATGCATCCCTAAGTCTTAATCCTGGTGCTCAAAGGCTTGGTCGCAAAAATGGCCATGATCATCCGCATGTCAACGATCAGATGGATTGTGTGAAATACCGTAAAAATGTTGGAGGTCATTCGAGAAGCGGAGCATAA 2655 0.4433 MSSWWGKLSSKEGKGKAKKESIFDAIQRKLKNASKDNKKSGGSKRHCSDTISEKGSRSIAPSSSSSPSKQVSRCQSFAEIYHSPTQPLPSPGSNLHTIDDDDSEIISTAKLERARCSKPSIYVSSRGVPTNVEGDSSVSSIDGGDSADSYIVSPRASRGENGNRANINSCFRVAHKDRSHNTIKRSSTRSSKPAHQSRNNKLLSAAAKGVHLHPKNLQVARPGGLCSAPDSSMSNPSINPMKASGSEQVLNSEFLTGKPYPTDIASGNCYNLGSGHNSVGGNLSRQTFCPQHRCSPECSPIPSPGMTSPGPGSRIQSGTVTPLHPQAGGAVAESPTRRPDNGKQQTHPLPLPPIRVTNPCPFSTTCSVPTTPVLRSPSSTENSTSPCSPWKKGQLLGRGTYGHVYFGFNRENGEMCAMKEVILYSDDARSRECAQQLGQEIAMLSQLQHPNIVQYYGTETVDDKLYIYLEYVSGGSIYKLVQEYGPLGENAIRNYTRQILLGLAYLHAKNTVHRDIKGANILVDPNGRIKLVDFGMAKHISGQACPFSLKGSPYWMAPEVINNSNGCNQAVDIWSLGCTVLEMATSKPPWSQYEGVAAMFKIGNTKELPTIPEHLSEEGKDFVRLCLQRNPQKRPSAVQLLEHPFVKNAVSERNVVPADPSEAPPAVINALRSLAIGPGKHKSRSSRAGPGSRDAHSSRNMSCPASPPGNLILPSRLTHASGRTPPSPLSSPHTASGSSTPITSGGGAIPLNHTKQPKHEAKGMFQQSQNSNRNTAHQKSKNGQFGRNVQIKQACRDVSSSDNAILAKNNRRVSREVRDGKSDLDDCLSQQLSKDHVRVNASLSLNPGAQRLGRKNGHDHPHVNDQMDCVKYRKNVGGHSRSGA* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0411 884 Pfam Protein kinase domain 391 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0411 884 MobiDBLite consensus disorder prediction 123 146 - -
Lja4g0411 884 MobiDBLite consensus disorder prediction 176 198 - -
Lja4g0411 884 MobiDBLite consensus disorder prediction 720 750 - -
Lja4g0411 884 ProSiteProfiles Protein kinase domain profile. 390 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0411 884 MobiDBLite consensus disorder prediction 1 100 - -
Lja4g0411 884 MobiDBLite consensus disorder prediction 11 52 - -
Lja4g0411 884 MobiDBLite consensus disorder prediction 690 705 - -
Lja4g0411 884 Gene3D Transferase(Phosphotransferase) domain 1 388 665 - -
Lja4g0411 884 ProSitePatterns Protein kinases ATP-binding region signature. 396 419 IPR017441 GO:0005524
Lja4g0411 884 MobiDBLite consensus disorder prediction 301 354 - -
Lja4g0411 884 MobiDBLite consensus disorder prediction 309 323 - -
Lja4g0411 884 MobiDBLite consensus disorder prediction 676 787 - -
Lja4g0411 884 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 780 - -
Lja4g0411 884 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 780 - -
Lja4g0411 884 MobiDBLite consensus disorder prediction 53 93 - -
Lja4g0411 884 CDD STKc_MEKK1_plant 390 646 - -
Lja4g0411 884 SUPERFAMILY Protein kinase-like (PK-like) 388 734 IPR011009 -
Lja4g0411 884 MobiDBLite consensus disorder prediction 761 787 - -
Lja4g0411 884 SMART serkin_6 390 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0411 Lja-Chr4 3320900 3327378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0411 4 856 MAP Kinase Kinase Kinase AT1G63700 51.171 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lja4g0411 Pkinase 3.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0411 K20717 - gmx:100777350 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0411 4 3320900 3327378 Lja4g0411 4 3320900 3327378 ECH
Lja4g0411 4 3320900 3327378 Lja1g4507 1 58633089 58638272 PCT