Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0404 ATGGAAGATAGGTCAGTTTTCTCTAATGGTTCTTCCCTGGATTGCCTTGGAGCTGAAACTGTTGGTGCATTTCATGGTAACGGTTTTTGCACTGTAAACGATGATCCTGTTGCTGACCATGAAATGGCGAAACAGCAACATTTGTTTCGTGAGCTGTTTCCGATTTACCTCAAGGAGAATTTGTCTAGAGGCATTGACCGGCCTGTGCCGGTGTTGCTTGGTGATGGTCAATTAGTGGATTTGTACAAACTGTTCACCGCTGTGAAGGAAAGAGGAGGGTGTGCTGTGGTGTCGAGAAAAAGTTTGTGGGGGTGTGTGGCACAGGACTTAGGCTTAAACCTTGAGGTTTCGCCTTCGGTTAAATTAGTGTATCACAGGTATCTCCAAGAGTTTGAAGGATGGCTGAGGAGAACCTATGAAGAGAGGAAATTTGAAAATGGGGATCATGGGGGCGATTGGGGCTTTAACTCTTTGCCATTGGATTTGGAAAAGGAGTTTAGAGGCCTATTGTCCTCTAACCCAAAGGAAGAGGAGACTGAACTTGTGCCGTCGGAATCGGATAAAATTATGAAGTACATTGATTTGGTGAACGATAAGAGTGATACTCACATGTCGGACGCCGAAAATGAAAACAAATGTGAAGGTTTGCAGCTTGTTGATGGGAATGGTGATGCAAAATTATGCAATGGCGGTGGTGAGGATGGTCCTTCTACCTTGGATTCAGAAAATGCTGAGAAGGAATTCAACTCTCGCAAACGCAAAAGGGAAGAATTCTCAGGAATGCTAAACTGGATCAGGAATATTGGAAAGCGTCTTCTTGATCCCTTACCACAACCAATACCAAAACCATCAAAGTTGAAGGAGTATAAAGGCCAAGACTTTTTTGGTCTGACACTGAGGGCAAGAGAGGCTCTCTTGGTGCACAAGCATGAAGAACCAAACAGTGAATCATCTTCTTTGCAGAAGCAGAAGATGCATCCTAACATGTATGAGGATCATGTTGCTGAGGATCATGCTGCTGGGGATCATGTTGCCCGTGGTCATCAAGGTACAATGGCGTTGAGAAGTAGTAAAAGGCTCACCTCTGGTCAAAAACACCTGTGCCCTAGCTGCATTACGTGGATAGTGTGTACCTCTGGTAATAGTCACCAGTGCCCTAACTGCGATTGGTTTTTAATATGTCCTCTGAAGAAAATTGACGAGGCTCCTCTGAAGAAAACTGGCGAGGCTCCTCTGAAGAACTCTGACAAGGCTCCTCTGAAGAAAACTGGTGGGGCTTCTCTGAAGAAATTTGGTAATGCTCGTCCAAAGAGAACTGATAAAAAAGCTTATGGGGCTTATTTTATCCAAAGGCAAGCAGAACTCCCGCAATGGACTGGTAAAGTTTCTGAGAGCGACGACACTAAATGGTCTGGTACACGGGTGTGGCCTTCGAAACATGACGCAGAAACTGCTACTGAAACCGATCCTATTGGGAGAGGAAGACAGGAGAACTGCAGCTGCAAAATTCCAGGTTCTGTGGAATGCGTCAGGTTTCACATAGCAGAGAACAGGATCAAACTGAATCGGGAAGTGGGTTTCGCTGCATTTTACCTATGGGGTTTCAATTCCATGGGTGAGGAAGTGTGTCTTCAGTGGACACCCGAAGAAGAAAAGAGATTTAAGGCTATCATGGGGTATAAACCCTCCTTCATCGACAAGTTTTGGGCAGTGGACAATGTGTCCAAACACTTTCGAAAGAAGACAAGAAGAGATGCCGTAGGCTATTTCTTCAATGTCTTTATCCTTCAACTAAGAAGCTACCAGAATCGGGTGACTCCAGAGGAGATTGATAGTGATGATGAAGAAGGATTTGAATTTGGATCTTTCACTGGTTTCGGGATGGAAGCTGTCAAGGGTCTAGGCCCAGGTGATGATTTCATGGAGTGTGTAGAGAACAAGCAGTGCTTTGATTTTGAGAGTGTAGAGAACAAGCCGTGCTCTGATTTGGAGTGTGTAGACAACAAGCAGTGCTCTGATATGGAGATGTAG 2031 0.4495 MEDRSVFSNGSSLDCLGAETVGAFHGNGFCTVNDDPVADHEMAKQQHLFRELFPIYLKENLSRGIDRPVPVLLGDGQLVDLYKLFTAVKERGGCAVVSRKSLWGCVAQDLGLNLEVSPSVKLVYHRYLQEFEGWLRRTYEERKFENGDHGGDWGFNSLPLDLEKEFRGLLSSNPKEEETELVPSESDKIMKYIDLVNDKSDTHMSDAENENKCEGLQLVDGNGDAKLCNGGGEDGPSTLDSENAEKEFNSRKRKREEFSGMLNWIRNIGKRLLDPLPQPIPKPSKLKEYKGQDFFGLTLRAREALLVHKHEEPNSESSSLQKQKMHPNMYEDHVAEDHAAGDHVARGHQGTMALRSSKRLTSGQKHLCPSCITWIVCTSGNSHQCPNCDWFLICPLKKIDEAPLKKTGEAPLKNSDKAPLKKTGGASLKKFGNARPKRTDKKAYGAYFIQRQAELPQWTGKVSESDDTKWSGTRVWPSKHDAETATETDPIGRGRQENCSCKIPGSVECVRFHIAENRIKLNREVGFAAFYLWGFNSMGEEVCLQWTPEEEKRFKAIMGYKPSFIDKFWAVDNVSKHFRKKTRRDAVGYFFNVFILQLRSYQNRVTPEEIDSDDEEGFEFGSFTGFGMEAVKGLGPGDDFMECVENKQCFDFESVENKPCSDLECVDNKQCSDMEM* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0404 676 CDD ARID 49 132 - -
Lja4g0404 676 SUPERFAMILY ARID-like 41 137 IPR036431 GO:0003677
Lja4g0404 676 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 653 - -
Lja4g0404 676 ProSiteProfiles ARID domain profile. 42 136 IPR001606 GO:0003677
Lja4g0404 676 MobiDBLite consensus disorder prediction 408 434 - -
Lja4g0404 676 MobiDBLite consensus disorder prediction 231 252 - -
Lja4g0404 676 MobiDBLite consensus disorder prediction 460 491 - -
Lja4g0404 676 Pfam ARID/BRIGHT DNA binding domain 63 132 IPR001606 GO:0003677
Lja4g0404 676 SMART bright_3 44 137 IPR001606 GO:0003677
Lja4g0404 676 MobiDBLite consensus disorder prediction 473 490 - -
Lja4g0404 676 Gene3D - 36 147 IPR036431 GO:0003677
Lja4g0404 676 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 653 - -
Lja4g0404 676 SMART ARID_2 40 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0404 Lja-Chr4 3241162 3246523 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lja4g0404 ARID 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0404 - - lja:Lj4g3v2973660.1 1389.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0404 4 3241162 3246523 Lja4g0404 4 3241162 3246523 ECH