Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0402 ATGTCTTCTGATCTCTATGCTTTTGGCACTACTTTCCACACACATTCAAGCTCAGACCTGGTTTCTGCTGATGGGGATGTTGGAGACTTTCCATTTTTCCCTGACCCTTTCACTTGCTTCACAAGTTCTCCCACTGATGAAGCTCAAAAGAGCTCAATTTCAAACCCATTTGATGAAACTCTTGCTAATTCTCTTGACCCATTTTCCCCGTCTTTTTCCTCTTTCTCTCCCCCAAGTTCCCACTTAGGAAGCCTCAGCCTTTATGCCGCCAACCGTGTGCAGCAGCAGCAGCCTCTGTCCTCAAATGGCTCCAATTTAGCGACGGAATATGGATGCTTCTCAGCTTTTGATGAGTCTGAAGTGAAAAGTGAGGAATCCCAAATGGGTGTTGTTCATGATTATACCTGCAGTACTCAGAAATTCATTCCTCACAGTTACAGTGGTGCTGAGGATTTGTCTAAGTACATGCAAAGAAGCTTCAGCAGTAACTGTTTTGAAGGGAAGCCAAGCTTTCTGTTCCAAAATTCTCACCATGATGCTTCAGTGGATTCATCAAAATTTCAAAAGCATGAGATGAATTCTCCTGAACACAGTGTCTTCTCTGGACAGATGAGGAGGGTGTGCAGCACAGGGGATTTGCAGAACATGAAAGGAAATCACATGTCTCCATCGGAAGGGCCTGTGTTGGAGGAATCAAACTTCAAAGTAGGGCGTTACAGTGCTGAAGAAAGGAAAGAAAGAATTTCTAAATACAGAGCCAAGAGAAACCAGAGGAACTTCAACAAGACCATTAAGTATGCATGCCGAAAGACACTAGCCGACAATCGACCACGCATACGTGGCAGGTTTGCACGCAACGATGAGACCTGCGAGATAACCAAGGCTCCGTGTGTAACTAGAGATGAAGATGAAGCTGATTTCTGGATTGAAGAATTGCGGCTGCATGAAGAGCAAGATCATGATGTAACAGTGGCAGCACAACAGTATATGAAAAGTTATGGAGCTACTCAGTTTCAATGTTATGGTTATTGA 1032 0.4409 MSSDLYAFGTTFHTHSSSDLVSADGDVGDFPFFPDPFTCFTSSPTDEAQKSSISNPFDETLANSLDPFSPSFSSFSPPSSHLGSLSLYAANRVQQQQPLSSNGSNLATEYGCFSAFDESEVKSEESQMGVVHDYTCSTQKFIPHSYSGAEDLSKYMQRSFSSNCFEGKPSFLFQNSHHDASVDSSKFQKHEMNSPEHSVFSGQMRRVCSTGDLQNMKGNHMSPSEGPVLEESNFKVGRYSAEERKERISKYRAKRNQRNFNKTIKYACRKTLADNRPRIRGRFARNDETCEITKAPCVTRDEDEADFWIEELRLHEEQDHDVTVAAQQYMKSYGATQFQCYGY* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0402 343 PANTHER CCT MOTIF FAMILY PROTEIN 26 340 - -
Lja4g0402 343 ProSiteProfiles CCT domain profile. 244 286 IPR010402 GO:0005515
Lja4g0402 343 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 26 340 IPR045281 GO:0009909
Lja4g0402 343 Pfam CCT motif 244 286 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0402 Lja-Chr4 3221164 3222946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0402 240 289 C2C2-CO-like Transcription Factor Family AT5G57660 54.000 3.74e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja4g0402 CCT 6.7e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0402 - - gmx:102665661 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0402 4 3221164 3222946 Lja4g0402 4 3221164 3222946 ECH