Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0399 ATGGGTTTTCCAGTGGGATACACTGAGCTTCTCTTCCCAAAGCTCGTTCTTCAAATCCTCTCCTTGTTGGGTTTCATACGAAAACTCGTCTGCACCCTCTTCCGCTACCTGGGTCTCCCCGATTTCCTCGAACCCGACATTGTCTGGCCCGACAACTCGACCCGGATACCCGAATTCGAGTCGGTGTCAGCGCTTCTCATCCGGGAAATCCTCCCCGTGGTGAAGTTCCGGGAGCTGGTGGACCCGCCGGAGAGCTGCGCCGTGTGCCTGAGCGAGTTCGAGGAGAGCGACGAGATCCGACGGTTGGCGAATTGCCGACATATCTTCCACCGGGCTTGTCTGGACCGTTGGATGGGGTACGATCAGAGCACGTGCCCACTGTGCCGGACACCGCTCATACCTGATGAAATGCAAGGTGCTTTCAATGAGAGATTGTGGGCTGCTTCTGGAATCCCTGAATTTCCCCCTGAATATCATCATCATCATCATCGTGTTCTTGCTTAA 504 0.5496 MGFPVGYTELLFPKLVLQILSLLGFIRKLVCTLFRYLGLPDFLEPDIVWPDNSTRIPEFESVSALLIREILPVVKFRELVDPPESCAVCLSEFEESDEIRRLANCRHIFHRACLDRWMGYDQSTCPLCRTPLIPDEMQGAFNERLWAASGIPEFPPEYHHHHHRVLA* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0399 167 Pfam Ring finger domain 85 129 IPR001841 -
Lja4g0399 167 SMART ringv_2 85 129 IPR011016 GO:0008270
Lja4g0399 167 SUPERFAMILY RING/U-box 66 135 - -
Lja4g0399 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 154 - -
Lja4g0399 167 SMART ring_2 86 128 IPR001841 -
Lja4g0399 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 133 IPR013083 -
Lja4g0399 167 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Lja4g0399 167 CDD RING-H2 86 129 - -
Lja4g0399 167 PANTHER BRH1 RING FINGER PROTEIN 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0399 Lja-Chr4 3208698 3209463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0399 1 150 C3H Transcription Factor Family AT1G63840 59.355 8.25e-60 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0399 K16281 - rcu:8287413 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0399 4 3208698 3209463 Lja4g0399 4 3208698 3209463 ECH