Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0397 ATGGGTGAAAACAAATCCAGGGACATGGTTTCATCATCAACCGGTAATTTCTGCTACTCAACAGATGTGTCACCAGGCTTTGTCTCTGACTCAGAGATGTTCAACCTCACCTCAGGCATGGATATGATAGGCTTTTCAAAGAACCTTCATCTTCATCACCAACAACAACAACAAGAAGAGAATCATCTAATCCAAGATTCTTCTTCCCCTTGGCAGAACAACAGCAGGTTCCTAGTTGATGATTCTTCTTTAAGGTGTGTGTTCCCTTGTGAAGGTAACGAAAGACCAAGTCAAGGCCTTTCACTTTCTCTCAGCTCAACCAACCCTTCTAGTATTGGTTTGCAACCTTTTGAGCTAAGACACACAAACCAACACCATCATCATCATCAACAACAAATGTTGCAAGATGCAAATATTTATCACCAACATGGGGATTTTGTGCTAAAACACTCCAAGTTCTTGGTACCTGCACAGGATCTATTAAACGAGCTTTGTAGTCTAGGAACAAAGAAAAATGATATTCCAAAGTCTGAAAAGTCTGAGAAGAACAAAGAGTGGGAAGAGGGTTCCTCAAAGAAACACTGTCTTGGTTCTCTAGAGTTTGTGGAATTGCAGAAGAGGAAGACCAAGCTGTTTTCAATGCTGGAAGAGGTTGAAAGAAGACACAGGCACTACTGTAATCAAATGAAGGCTGTGGTTTCCTCCTTTGAAGCAGTGGCTGGTAATGGTGCTGCTACAGTTTACTCAGCGTTGGCTTTGAAACAAATGTCTAAGCATTTCAGATGTTTGAAGGATGGGATTTTGGAGCAGATTCATGCAACAAGAAAACTCTTGGGAGAGAAAGATCCAATTTCACCAGGCACAACAAAGGGCGAAACACCTAGGCTTAGAATCATTGAACAAACACTGAGACAGCAGAGGGCATTCCAGCAAATGAACATGATGGAAACTCATCCATGGAGGCCACAACGTGGCCTTCCTGAGCGATCCGTTTCGGTTCTCCGGGCTTGGCTCTTTGAGCACTTTCTCCACCCGTACCCAAGCGATGTAGATAAACATATTTTAGCCAGGCAAACTGGTCTCTCGAGAAGCCAGGTATCGAATTGGTTTATCAATGCAAGGGTGAGGCTATGGAAGCCAATGGTAGAGGAAATGTACTTGGAAGAAGAGAAGGAGCGAGAGCAAAACATGGTGGCATCCTCAGAGGGAGCAGATAACAATAATATTCATGAAGAAGAAGATATGAACCATGATGTTCAGAACCTATCTCCTTCAACAAGACCTGATCAGAAGCCAACAACACAGGCGAGGAGGCTTCTTCGAATCGACTCAGATTGCATGTCGTCCATCATCAACAACCCGGACCATGATCAAAATGACACAAAGACCCACCACCACATGAATCCCCACGAACAATTTGAGTCCGGAGTTGATCTTGATTTCTCATCCTATGCTACGCACCACTCTCCAAGCATGCAGGTTTCTTACACCAGCGCCGGAAACAATGTCAACCCAGGTTTCCGTGGTGGTGGTGGAGTGTCGTTGACGCTAGGGTTGCAACAGCACGGTGGTTCAGGCGTGGTGAGCTTGGCGTTCCCTCCTCCGCAAGCAACACAAGGCTCCATGTACTACACGAGAGACCAGGTTGATCAAGAGTGTCCAACGGGTCAGTTTTCTCTCTTGGATGGTGAAGGACAAAACATGCCCTACAGGAATCTCATGGGGACACAGTTGCTTCATGACTTTGCATGA 1752 0.4521 MGENKSRDMVSSSTGNFCYSTDVSPGFVSDSEMFNLTSGMDMIGFSKNLHLHHQQQQQEENHLIQDSSSPWQNNSRFLVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQPFELRHTNQHHHHHQQQMLQDANIYHQHGDFVLKHSKFLVPAQDLLNELCSLGTKKNDIPKSEKSEKNKEWEEGSSKKHCLGSLEFVELQKRKTKLFSMLEEVERRHRHYCNQMKAVVSSFEAVAGNGAATVYSALALKQMSKHFRCLKDGILEQIHATRKLLGEKDPISPGTTKGETPRLRIIEQTLRQQRAFQQMNMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEEKEREQNMVASSEGADNNNIHEEEDMNHDVQNLSPSTRPDQKPTTQARRLLRIDSDCMSSIINNPDHDQNDTKTHHHMNPHEQFESGVDLDFSSYATHHSPSMQVSYTSAGNNVNPGFRGGGGVSLTLGLQQHGGSGVVSLAFPPPQATQGSMYYTRDQVDQECPTGQFSLLDGEGQNMPYRNLMGTQLLHDFA* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0397 583 Pfam Associated with HOX 147 267 IPR006563 -
Lja4g0397 583 Pfam Homeobox KN domain 337 376 IPR008422 GO:0003677|GO:0006355
Lja4g0397 583 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5 537 - -
Lja4g0397 583 SMART prehox3 142 269 IPR006563 -
Lja4g0397 583 SUPERFAMILY Homeodomain-like 321 386 IPR009057 -
Lja4g0397 583 Coils Coil 201 221 - -
Lja4g0397 583 CDD homeodomain 320 381 IPR001356 GO:0003677
Lja4g0397 583 Gene3D - 323 385 - -
Lja4g0397 583 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 5 537 - -
Lja4g0397 583 SMART HOX_1 320 384 IPR001356 GO:0003677
Lja4g0397 583 ProSiteProfiles 'Homeobox' domain profile. 317 380 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0397 Lja-Chr4 3178161 3182485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0397 32 583 Homeobox Transcription Factor Family AT5G41410 44.318 1.50e-132 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lja4g0397 POX 8.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0397 - - mtr:MTR_8g098815 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0397 4 3178161 3182485 Lja4g0397 4 3178161 3182485 ECH