Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0394 ATGGCCACAAAAGAATCAAGTTCTGCTGCCTCTGCTTCTGCTGCAGGGGATGCTAAAATTAAGAGGGTTCTCACCCATGGTGGTAGATATGCACAGTACAATGTGTATGGAAACTTGTTCGAGGTGTCCTCGAAGTATGTGCCTCCCATTCGCCCCATCGGTAGAGGGGCTTATGGCTTTGTCTGTGCTGCTGTGAATTCTGATACACATGAACAAGTTGCCATCAAGAAGATAGGTAACACGTTTGACAATATCATTGATGCTAAGAGAACACTGAGAGAAATCAAGCTCCTTCGTCACATGGATCATGAAAATATCATTGCCATCAAGGATATCATACGGCCCCCCAAAAAGGAGACCTTCAATGATGTATACATTGTTTATGAATTGATGGACACTGATCTGCATCATATAATTCATTCTGACCAACCTCTTAGAGAGGAACATTGTCAGTACTTCTTATACCAGCTGCTACGGGGGCTGAAATATGTGCACTCAGCTAATGTTTTGCACCGTGATCTTAAGCCCAGTAACTTGCTGATGAATGCAAACTGTGACCTTAAAATTGGAGACTTTGGTTTGGCAAGGACAACATCTGAAACAGATTTCATGACAGAGTATGTTGTCACACGTTGGTACAGAGCCCCGGAATTGCTTCTTAGTTGTTCTGAGTACACCTCTGCAATTGATGTTTGGTCTGTTGGATGCATATTTGGTGAAATTTTGACCAGAGAACCCATGTTTCCTGGGAAAGACTATGTTCACCAATTAAGGCTTATAACTGAGTTAATAGGGTCACCTGACGATGCTAGCCTTGGATTTCTCCGAAGCGATAATGCTAGAAGATACTTTAGACAATTCCAACAATACCGGAAGCAAAAATTCTCAGCTAGATTCCCTAACATGTTGCCTGAGGCATTAGATCTGTTAGAAAAGATGCTTATCTTTGATCCAAACAAACGCATCACAGTTGAAGAGGCACTTAGTCACCCATACCTTTCATCACTTCACAACATCAATAACGAGCCAGTTTGCCCAAGGCCATTCAGTTTTGATTTTGATCAACCAACATGCACTGAAGAGCAGGTCAAGGAGCTCATCTGGAAGGAATCAGTGAAGTTCAATCCAGATCCTTCGTGTCAGTAA 1146 0.4241 MATKESSSAASASAAGDAKIKRVLTHGGRYAQYNVYGNLFEVSSKYVPPIRPIGRGAYGFVCAAVNSDTHEQVAIKKIGNTFDNIIDAKRTLREIKLLRHMDHENIIAIKDIIRPPKKETFNDVYIVYELMDTDLHHIIHSDQPLREEHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLLMNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLSCSEYTSAIDVWSVGCIFGEILTREPMFPGKDYVHQLRLITELIGSPDDASLGFLRSDNARRYFRQFQQYRKQKFSARFPNMLPEALDLLEKMLIFDPNKRITVEEALSHPYLSSLHNINNEPVCPRPFSFDFDQPTCTEEQVKELIWKESVKFNPDPSCQ* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0394 381 ProSiteProfiles Protein kinase domain profile. 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0394 381 ProSitePatterns Protein kinases ATP-binding region signature. 53 77 IPR017441 GO:0005524
Lja4g0394 381 Gene3D Phosphorylase Kinase; domain 1 30 370 - -
Lja4g0394 381 CDD STKc_TEY_MAPK 40 376 - -
Lja4g0394 381 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 21 379 - -
Lja4g0394 381 ProSitePatterns MAP kinase signature. 82 185 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lja4g0394 381 Gene3D Transferase(Phosphotransferase) domain 1 131 360 - -
Lja4g0394 381 SMART serkin_6 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0394 381 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 21 379 - -
Lja4g0394 381 Pfam Protein kinase domain 51 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0394 381 SUPERFAMILY Protein kinase-like (PK-like) 50 340 IPR011009 -
Lja4g0394 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0394 Lja-Chr4 3148089 3150936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0394 6 379 MAP Kinase Gene Family AT4G01370 78.075 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Lja4g0394 Pkinase 5.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0394 - - gmx:100807109 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0394 4 3148089 3150936 Lja4g0394 4 3148089 3150936 ECH