Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0392 ATGGGACACCATTCTTGCTGCAATCAACAGAAGGTTAAGAGAGGGCTTTGGTCCCCTGAGGAAGATGAGAAACTCATCAGATACATCACCACTCATGGCTATGGTTGTTGGAGTGAAGTTCCTGAGAAAGCTGGGCTTCAAAGGTGTGGGAAGAGTTGTCGCTTGAGATGGATTAATTATTTGAGACCTGACATTAGAAGAGGCAGGTTTACACCAGAGGAGGAGAAGTTAATTATTAGCCTCCATGGCGTCGTAGGCAACAGATGGGCTCACATTGCAAGCCACTTGCCTGGAAGAACTGACAATGAAATAAAGAACTACTGGAATTCTTGGATCAAAAAGAAAATTAGAAAGCATTCATCATCAGTGTCTTCAACCACCAACATTGTACAAAATAATGTGGATCACTCCCAGTTCAATTATAATTCCAATAACCTAGATCATCACCTAGCCAACCAAGAAAACTTAACATCAAATAAGCCACCATTAATTCAACAAGAAACAACCTTGTTTTCCTCCACATGCCCCTTGTTCATGTTTGAACCTACTTCACTAGATCATGTGACAGTAACAACAACAGACAGCAATATTAATAATGTGAGAGTCTCAGAACACTTGATTCAAGATGCTGAAACATCATGGAACTTGAGCAACCATCATCAATTGCAAGTTCATGCACTTCCACCTCCATCAACAACTTTCACTATGGCTGTGGGCTTGGACAACACTAATTATCTTCCACCTTTGATAGAGAACATGGAAGAGGAAGGAGATATAACTCTAGAGTGTTTTCAGAGACAAGGATTGCATTTGAATGAGTGGGTGGAAACCCAGCAACAACAATGTCCTAACTTTCTTTTCTGGGACAATGTTGAAGGACATTTTGGTGGGGGAGAACTAGCACCAAATTCATCAAATATGGGAACAATTACAAACACAACACTTTCTCCTTTTCCTTCTTCTTTGTGA 969 0.4056 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKHSSSVSSTTNIVQNNVDHSQFNYNSNNLDHHLANQENLTSNKPPLIQQETTLFSSTCPLFMFEPTSLDHVTVTTTDSNINNVRVSEHLIQDAETSWNLSNHHQLQVHALPPPSTTFTMAVGLDNTNYLPPLIENMEEEGDITLECFQRQGLHLNEWVETQQQQCPNFLFWDNVEGHFGGGELAPNSSNMGTITNTTLSPFPSSL* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0392 322 CDD SANT 69 112 IPR001005 -
Lja4g0392 322 Gene3D - 69 144 - -
Lja4g0392 322 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja4g0392 322 CDD SANT 17 61 IPR001005 -
Lja4g0392 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja4g0392 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja4g0392 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja4g0392 322 PANTHER MYB TRANSCRIPTION FACTOR 1 320 - -
Lja4g0392 322 MobiDBLite consensus disorder prediction 302 322 - -
Lja4g0392 322 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lja4g0392 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja4g0392 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja4g0392 322 Gene3D - 6 66 - -
Lja4g0392 322 PANTHER MYB DOMAIN PROTEIN 55 1 320 - -
Lja4g0392 322 SMART sant 66 114 IPR001005 -
Lja4g0392 322 SMART sant 13 63 IPR001005 -
Lja4g0392 322 MobiDBLite consensus disorder prediction 299 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0392 Lja-Chr4 3139862 3142100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0392 1 308 MYB Transcription Factor Family AT1G63910 49.444 3.58e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g0392 Myb_DNA-binding 4.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0392 K09422 K02947 gmx:100803556 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0392 4 3139862 3142100 Lja4g0392 4 3139862 3142100 ECH
Lja4g2320 4 25701976 25703339 Lja4g0392 4 3139862 3142100 PCT