Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0384 ATGATGAATGAGCTTGCTTGCTTAATGGATTGGGATTTGGAAGCAATTGTCAGAGGATGCAACAACGGTGAAGCCTCAGCAACCACCATGATGGACCATCAGGATCATAACTTTTCTCATCATTTCTTCTCTGAACAAGATGAGCTTCTTGGCTTTAATTTTCCTGAATTCTCAGAAGCAACGTGTGTCCTTGATGAATTGGAAGAGCTTTACAAACCTTTCTACCCAGTTTTGCACCCTCTGAATTCATTACAGAGTACCATAGTCACAAGTTCCCTACCTATCCCAAAAGAAGTCAAAGAACTTAAAGCATCATCATCAGAGAAAGCAGCTTCACAAGATTTGCAAGTTCCCTCAGTATCTAAATATAAAAGAGGCAAGAAAAACCAGAACAAGAGTGTGGTGAAGAAACAAGTGAAGGGAGGTGATGGTCTTGCTGATGAGTGGGCTTGGCGTAAATATGGACAGAAACCAATAAAGGGTTCCCCTTATCCTCGAAGCTACTACAGGTGCAGCAGCACCAAAGGATGCTTGGCAAGGAAACAAGTTGAAAGGAGCCATTTGGATCCTGCAGTTTTTCTAGTTACCTACACAGCAGAACACAATCATTCCCAACCAGCAAGGAAAAACTCATTAGCAGGAACCACAAGGAATAAGAACATTTCCCAAAACACATGTTCCTCAAATTCCTCATCATCAGCAGTAACTCACTCTCCAATAAGGACACCCAATTTGGTTGTTGTGGCCTCATCCAACATTAAAGATGAGGTTGGGACAAGAGTGCAACAAAGTGATAAGGGTTTGGAGAAAGAGGAAGATTTTCTTGAGTGGTTAGATGGTGATGCTGGAGGTGCTACATTTGGTGATGGTTGGATCCCAAGCTCAGAGCTTGAGGATCTCATAGGATTTAAGTACCAAGAACTTGTAGATGGCTGTGATTTCACTGATGGTTCTGATGATCGATGA 966 0.4224 MMNELACLMDWDLEAIVRGCNNGEASATTMMDHQDHNFSHHFFSEQDELLGFNFPEFSEATCVLDELEELYKPFYPVLHPLNSLQSTIVTSSLPIPKEVKELKASSSEKAASQDLQVPSVSKYKRGKKNQNKSVVKKQVKGGDGLADEWAWRKYGQKPIKGSPYPRSYYRCSSTKGCLARKQVERSHLDPAVFLVTYTAEHNHSQPARKNSLAGTTRNKNISQNTCSSNSSSSAVTHSPIRTPNLVVVASSNIKDEVGTRVQQSDKGLEKEEDFLEWLDGDAGGATFGDGWIPSSELEDLIGFKYQELVDGCDFTDGSDDR* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0384 321 SMART WRKY_cls 145 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g0384 321 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 10 262 IPR044810 GO:0003700
Lja4g0384 321 Gene3D WRKY domain 129 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g0384 321 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 10 262 - -
Lja4g0384 321 ProSiteProfiles WRKY domain profile. 140 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g0384 321 Pfam WRKY DNA -binding domain 147 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja4g0384 321 SUPERFAMILY WRKY DNA-binding domain 145 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja4g0384 321 MobiDBLite consensus disorder prediction 203 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0384 Lja-Chr4 3088280 3090114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0384 2 253 WRKY Transcription Factor Family AT4G23550 45.113 1.40e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja4g0384 WRKY 3.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0384 K13426 - gmx:102663255 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0384 4 3088280 3090114 Lja4g0384 4 3088280 3090114 ECH
Lja4g0384 4 3088280 3090114 Lja5g0674 5 6073274 6074802 ECH
Lja4g0384 4 3088280 3090114 Lja3g1845 3 20906793 20908656 ECH
Lja4g0384 4 3088280 3090114 Lja1g3051 1 36914094 36915753 ECH